Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2610

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10977 and 10978 are separated by 139 nucleotides10978 and 10979 are separated by 494 nucleotides mRNA_2609: 10977 - Hypothetical Protein, at 588,972 to 589,930 10977 mRNA_2610: 10978 - HMMPfam-OsmC-like protein-PF02566,SUPERFAMILY--SSF82784,TIGRFAM-organ_hyd_perox peroxiredoxin, Ohr subfamily-TIGR03561, at 590,070 to 590,802 10978 mRNA_2611: 10979 - BLAST phosphatase iiic [Colletotrichum gloeosporioides ..., at 591,297 to 591,714 10979

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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589,112 + 10977 mRNA_2609 0.15 +1.1
589,319 - 10977 mRNA_2609 0.36 -0.2
589,423 + 10977 mRNA_2609 0.47 -0.5
589,424 - 10977 mRNA_2609 0.47 +0.6
589,531 + 10977 mRNA_2609 0.58 -0.0
589,709 - 10977 mRNA_2609 0.77 +2.0
589,719 + 10977 mRNA_2609 0.78 +1.0
589,748 - 10977 mRNA_2609 0.81 +1.1
589,857 + -0.6
590,272 - 10978 mRNA_2610 0.28 -0.4
590,403 - 10978 mRNA_2610 0.45 +0.1
590,557 + 10978 mRNA_2610 0.66 -0.1
590,692 - 10978 mRNA_2610 0.85 -1.1
590,845 - +1.8
590,848 + +2.2
590,861 + +0.6
590,869 + +0.8
590,888 - -0.5
591,000 + +1.2
591,002 + -0.4
591,134 + +0.3
591,150 - -0.4
591,345 - 10979 mRNA_2611 0.11 +0.6
591,453 + 10979 mRNA_2611 0.37 +0.1

Or see this region's nucleotide sequence