Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2626

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10993 and 10994 are separated by 283 nucleotides10994 and 10995 are separated by 928 nucleotides mRNA_2625: 10993 - K20784 XEG113 arabinosyltransferase, at 618,435 to 621,494 10993 mRNA_2626: 10994 - Interpro GDP-fucose protein O-fucosyltransferase, at 621,778 to 623,321 10994 mRNA_2627: 10995 - K05941 E2.3.2.15 glutathione gamma-glutamylcysteinyltransferase, at 624,250 to 625,308 10995

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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620,813 - 10993 mRNA_2625 0.78 +0.3
620,819 - 10993 mRNA_2625 0.78 +1.9
620,851 + 10993 mRNA_2625 0.79 +1.7
620,975 + 10993 mRNA_2625 0.83 +2.1
621,110 - 10993 mRNA_2625 0.87 +0.8
621,138 + 10993 mRNA_2625 0.88 -0.4
621,400 + -0.7
621,415 - +0.1
621,513 - -1.7
621,721 - -0.2
621,833 - -0.6
622,121 - 10994 mRNA_2626 0.22 +0.7
622,171 + 10994 mRNA_2626 0.25 -0.3
622,176 - 10994 mRNA_2626 0.26 +0.6
622,302 + 10994 mRNA_2626 0.34 +0.3
622,347 + 10994 mRNA_2626 0.37 +0.3
622,385 + 10994 mRNA_2626 0.39 -0.4
622,453 + 10994 mRNA_2626 0.44 +1.1
622,582 - 10994 mRNA_2626 0.52 -0.2
622,887 + 10994 mRNA_2626 0.72 +1.8
622,990 - 10994 mRNA_2626 0.78 -0.5
623,181 + +0.2
623,305 - +0.1
623,452 - +0.8
623,457 - -0.1
623,460 + +0.6
623,461 + +1.0
623,586 + +0.3
623,608 + -0.5
623,620 - +0.9
623,622 - -0.1
623,627 - +0.4
623,631 - -0.4
623,752 + +1.7
623,761 + +0.2
623,764 - +0.0
623,771 - -0.8
623,906 + +0.8
623,908 + +0.5
623,913 + +1.1
623,919 + +0.6
624,074 + +1.5
624,167 + -1.2

Or see this region's nucleotide sequence