Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2655

Experiment: YNB Glucose 75mM Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11022 and 11023 are separated by 403 nucleotides11023 and 11024 are separated by 147 nucleotides mRNA_2654: 11022 - K00864 glpK, GK glycerol kinase, at 685,161 to 688,307 11022 mRNA_2655: 11023 - HMMPfam-Protein of unknown function (DUF1479)-PF07350,SUPERFAMILY--SSF51197, at 688,711 to 690,606 11023 mRNA_2656: 11024 - KOG3417 Ras1 guanine nucleotide exchange factor, at 690,754 to 695,161 11024

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
remove
688,160 + +0.9
688,230 - -1.4
688,323 + +0.3
688,374 - +0.4
688,410 - +0.2
688,573 - -0.3
688,574 - -0.3
688,577 - +1.0
688,582 + -0.4
688,593 + +0.4
688,594 - +0.1
688,597 - -0.2
688,610 + +0.6
688,627 + +0.7
688,645 + -1.0
688,645 + +1.6
688,662 - +1.0
688,687 - -0.9
688,776 - +1.2
688,781 + -0.1
689,121 + 11023 mRNA_2655 0.22 -0.1
689,372 + 11023 mRNA_2655 0.35 +0.3
689,658 + 11023 mRNA_2655 0.50 +2.1
689,924 - 11023 mRNA_2655 0.64 -1.6
690,135 - 11023 mRNA_2655 0.75 +1.1
690,446 - +0.7
690,581 + +1.5
690,890 + +0.4
691,054 - +1.0
691,308 + 11024 mRNA_2656 0.13 +0.2
691,348 + 11024 mRNA_2656 0.13 +0.6
691,474 + 11024 mRNA_2656 0.16 +1.2
691,511 + 11024 mRNA_2656 0.17 +0.4
691,599 - 11024 mRNA_2656 0.19 +0.3

Or see this region's nucleotide sequence