Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2674

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11041 and 11042 are separated by 454 nucleotides mRNA_2673: 11041 - K10844 ERCC2, XPD DNA excision repair protein ERCC-2, at 734,339 to 738,341 11041 mRNA_2674: 11042 - Hypothetical Protein, at 738,796 to 742,591 11042

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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737,976 + +0.3
738,074 + -0.8
738,088 + -0.4
738,155 + -0.8
738,378 - +0.9
738,478 + +0.8
738,523 - +1.3
738,572 + -1.9
738,595 + -0.3
738,710 + +1.3
738,837 - +1.3
738,876 + +1.1
738,965 - +0.4
739,086 + +0.2
739,136 + +0.5
739,228 + 11042 mRNA_2674 0.11 +0.3
739,245 - 11042 mRNA_2674 0.12 +1.3
739,265 - 11042 mRNA_2674 0.12 -0.9
739,588 + 11042 mRNA_2674 0.21 +0.4
739,601 + 11042 mRNA_2674 0.21 -1.2
739,857 + 11042 mRNA_2674 0.28 -0.7
739,999 - 11042 mRNA_2674 0.32 -0.8
740,008 + 11042 mRNA_2674 0.32 -1.0
740,012 + 11042 mRNA_2674 0.32 -1.0
740,294 + 11042 mRNA_2674 0.39 +0.2
740,456 + 11042 mRNA_2674 0.44 +0.6
740,459 + 11042 mRNA_2674 0.44 -0.4
740,503 - 11042 mRNA_2674 0.45 +1.0
740,585 - 11042 mRNA_2674 0.47 +2.5
741,123 + 11042 mRNA_2674 0.61 +1.1
741,149 + 11042 mRNA_2674 0.62 +2.4
741,195 - 11042 mRNA_2674 0.63 -1.1
741,199 + 11042 mRNA_2674 0.63 +1.4
741,279 - 11042 mRNA_2674 0.65 -0.3
741,289 - 11042 mRNA_2674 0.66 +0.2
741,435 - 11042 mRNA_2674 0.70 +1.5
741,481 - 11042 mRNA_2674 0.71 +1.7
741,519 + 11042 mRNA_2674 0.72 +0.1
741,878 + 11042 mRNA_2674 0.81 +0.1
742,326 - -1.1
742,334 - +0.9
742,338 + +0.0
742,390 - -0.4
742,638 + -0.1
742,664 - -0.5
743,026 + +0.9
743,045 - +0.6
743,048 + +0.1
743,067 + +1.6
743,223 + +1.0
743,317 - +1.5
743,354 + +1.0
743,365 - -0.3

Or see this region's nucleotide sequence