Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2733

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11100 and 11101 are separated by 209 nucleotides11101 and 11102 are separated by 292 nucleotides mRNA_2732: 11100 - Hypothetical Protein, at 95,429 to 95,692 11100 mRNA_2733: 11101 - KOG0254 Predicted transporter (major facilitator superfamily), at 95,902 to 98,475 11101 mRNA_2734: 11102 - K14779 DDX52, ROK1 ATP-dependent RNA helicase DDX52/ROK1, at 98,768 to 101,128 11102

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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95,055 + +0.0
95,164 - +2.5
95,167 - -0.2
95,169 + +0.7
95,177 + +0.7
95,190 + +0.2
95,247 + +0.5
95,285 - +0.7
95,352 + -0.2
95,461 + 11100 mRNA_2732 0.12 +0.0
95,497 - 11100 mRNA_2732 0.26 -3.2
95,508 - 11100 mRNA_2732 0.30 +1.2
95,513 + 11100 mRNA_2732 0.32 +0.7
95,525 + 11100 mRNA_2732 0.36 +1.2
95,539 - 11100 mRNA_2732 0.42 -0.2
95,552 + 11100 mRNA_2732 0.47 -0.2
95,688 - -0.7
95,692 + +1.2
95,707 + -2.8
95,710 + +0.6
95,765 - -0.9
95,891 - -0.2
95,941 - +1.6
96,187 - 11101 mRNA_2733 0.11 +1.8
96,190 - 11101 mRNA_2733 0.11 +1.0
96,215 - 11101 mRNA_2733 0.12 +0.4
96,682 + 11101 mRNA_2733 0.30 -0.1
96,970 - 11101 mRNA_2733 0.41 -1.4
97,330 - 11101 mRNA_2733 0.55 +0.0
97,556 + 11101 mRNA_2733 0.64 -0.0
97,561 + 11101 mRNA_2733 0.64 +1.4
97,583 - 11101 mRNA_2733 0.65 +2.1
97,706 + 11101 mRNA_2733 0.70 -1.0
97,830 - 11101 mRNA_2733 0.75 -0.3
97,920 - 11101 mRNA_2733 0.78 -0.3
97,925 + 11101 mRNA_2733 0.79 -0.1
97,928 - 11101 mRNA_2733 0.79 +0.9
97,958 - 11101 mRNA_2733 0.80 +0.0
97,965 + 11101 mRNA_2733 0.80 -0.5
97,972 + 11101 mRNA_2733 0.80 +0.2
97,979 + 11101 mRNA_2733 0.81 +0.4
97,986 + 11101 mRNA_2733 0.81 +2.1
98,034 + 11101 mRNA_2733 0.83 +0.5
98,248 - -0.1
98,251 + -0.3
98,450 + -0.1
98,582 + +0.3
98,709 + +1.0
98,839 + +0.7

Or see this region's nucleotide sequence