Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2735

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11102 and 11103 are separated by 133 nucleotides11103 and 11104 are separated by 185 nucleotides mRNA_2734: 11102 - K14779 DDX52, ROK1 ATP-dependent RNA helicase DDX52/ROK1, at 98,768 to 101,128 11102 mRNA_2735: 11103 - K02257 COX10 protoheme IX farnesyltransferase, at 101,262 to 102,881 11103 mRNA_2736: 11104 - K11093 SNRP70 U1 small nuclear ribonucleoprotein 70kDa, at 103,067 to 104,847 11104

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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101,203 + +1.8
101,221 + -0.8
101,952 + 11103 mRNA_2735 0.43 -1.3
103,123 + -1.0

Or see this region's nucleotide sequence