Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2743

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11110 and 11111 are separated by 214 nucleotides11111 and 11112 are separated by 431 nucleotides mRNA_2742: 11110 - K18880 HCD1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase, at 117,665 to 118,794 11110 mRNA_2743: 11111 - KOG4491 Predicted membrane protein, at 119,009 to 120,330 11111 mRNA_2744: 11112 - K20798 HENMT1 small RNA 2'-O-methyltransferase, at 120,762 to 122,799 11112

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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118,526 + 11110 mRNA_2742 0.76 +0.1
118,612 - 11110 mRNA_2742 0.84 +1.3
118,613 + 11110 mRNA_2742 0.84 +0.8
118,627 + 11110 mRNA_2742 0.85 -0.2
118,769 + -0.2
118,890 - -0.7
118,893 - +1.7
118,894 - -0.7
118,896 + +1.9
118,897 + -0.4
118,910 - +0.8
118,916 - +2.4
118,959 - -0.0
119,078 + +2.3
119,078 - +2.0
119,322 + 11111 mRNA_2743 0.24 +0.9
119,528 - 11111 mRNA_2743 0.39 -1.5
119,657 - 11111 mRNA_2743 0.49 +1.4
119,743 - 11111 mRNA_2743 0.56 +0.4
119,788 - 11111 mRNA_2743 0.59 +0.3
119,796 - 11111 mRNA_2743 0.60 -1.4
119,796 + 11111 mRNA_2743 0.60 +0.6
119,940 - 11111 mRNA_2743 0.70 -0.0
120,072 - 11111 mRNA_2743 0.80 +0.7
120,088 - 11111 mRNA_2743 0.82 +0.2
120,097 + 11111 mRNA_2743 0.82 +0.2
120,099 + 11111 mRNA_2743 0.82 +0.6
120,105 + 11111 mRNA_2743 0.83 -0.0
120,246 - +0.3
120,249 + +0.1
120,251 + -0.5
120,516 - +0.0
120,561 + -1.2
120,570 - -1.6
120,700 - +1.5
120,701 + +0.5
120,734 + +2.3
120,827 - +0.9
120,841 - +0.0
120,853 + +0.7
120,860 - -0.1
121,129 - 11112 mRNA_2744 0.18 -0.8

Or see this region's nucleotide sequence