Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2759

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11126 and 11127 are separated by 262 nucleotides11127 and 11128 are separated by 414 nucleotides mRNA_2758: 11126 - Hypothetical Protein, at 150,871 to 152,585 11126 mRNA_2759: 11127 - K12158 NEDD8 ubiquitin-like protein Nedd8, at 152,848 to 153,537 11127 mRNA_2760: 11128 - HMMPfam-Acyltransferase-PF01553,SMART-Phosphate acyltransferases-SM00563,SUPERFAMILY--SSF69593, at 153,952 to 156,416 11128

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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152,412 + 11126 mRNA_2758 0.90 +1.1
152,413 - 11126 mRNA_2758 0.90 +0.6
152,424 - +0.7
152,601 - +0.8
152,733 + +0.2
152,737 + -0.6
152,738 - -0.3
152,743 - -2.3
152,744 + +2.2
152,772 + +0.3
153,623 - +0.5
153,770 + +1.0
153,772 + +1.2
153,903 - +1.6
153,908 - +0.4
153,914 - -0.2
154,316 - 11128 mRNA_2760 0.15 +1.5
154,509 + 11128 mRNA_2760 0.23 +0.1
154,516 - 11128 mRNA_2760 0.23 +0.1
154,518 + 11128 mRNA_2760 0.23 +1.4

Or see this region's nucleotide sequence