Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2822

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11189 and 11190 are separated by 343 nucleotides11190 and 11191 are separated by 479 nucleotides mRNA_2821: 11189 - BLAST DNA polymerase gamma [Kalmanozyma brasiliensis GH..., at 300,473 to 301,385 11189 mRNA_2822: 11190 - SUPERFAMILY--SSF52047, at 301,729 to 303,000 11190 mRNA_2823: 11191 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 303,480 to 304,770 11191

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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302,659 - 11190 mRNA_2822 0.73 +2.3
303,362 + +0.1
303,509 + -0.3
303,567 + +1.7
303,671 - 11191 mRNA_2823 0.15 +1.8
303,757 - 11191 mRNA_2823 0.21 -0.1
303,782 - 11191 mRNA_2823 0.23 -0.0
303,796 + 11191 mRNA_2823 0.24 +2.3
303,939 - 11191 mRNA_2823 0.36 +0.6
303,945 + 11191 mRNA_2823 0.36 +2.3
303,952 - 11191 mRNA_2823 0.37 -0.2
303,962 + 11191 mRNA_2823 0.37 +0.4
303,964 + 11191 mRNA_2823 0.37 +3.0

Or see this region's nucleotide sequence