Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2826

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11193 and 11194 are separated by 233 nucleotides11194 and 11195 are separated by 65 nucleotides mRNA_2825: 11193 - HMMPfam-F-box-like-PF12937, at 306,880 to 308,238 11193 mRNA_2826: 11194 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 308,472 to 309,591 11194 mRNA_2827: 11195 - Hypothetical Protein, at 309,657 to 312,569 11195

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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307,908 - 11193 mRNA_2825 0.76 -1.1
307,921 - 11193 mRNA_2825 0.77 +0.6
307,924 - 11193 mRNA_2825 0.77 -0.1
307,927 - 11193 mRNA_2825 0.77 -0.1
307,950 + 11193 mRNA_2825 0.79 +1.2
308,070 - 11193 mRNA_2825 0.88 +0.3
308,071 + 11193 mRNA_2825 0.88 -0.1
308,083 + 11193 mRNA_2825 0.89 +0.9
308,088 - 11193 mRNA_2825 0.89 -0.2
308,091 - 11193 mRNA_2825 0.89 +1.7
308,091 + 11193 mRNA_2825 0.89 +0.7
308,198 - +1.1
308,198 - +0.6
308,203 - -0.4
308,209 + +2.0
308,209 + +0.5
308,212 - +0.5
308,213 + +0.2
308,216 + +1.0
308,232 + -0.0
308,245 - +1.0
308,261 - +1.6
308,262 + +0.7
308,359 + +0.4
308,372 + -0.0
308,388 + -1.4
308,395 + +2.2
308,401 + +1.1
308,417 - +0.8
308,418 - -1.1
308,418 + -0.4
308,424 - -0.5
308,431 - -0.1
308,535 + +0.8
308,557 - +0.8
308,569 + +1.6
308,579 + +0.1
308,582 - +0.6
308,583 - +0.3
308,586 - 11194 mRNA_2826 0.10 -0.3
308,589 - 11194 mRNA_2826 0.10 +0.4
308,708 + 11194 mRNA_2826 0.21 -0.5
308,725 - 11194 mRNA_2826 0.23 +0.7
308,870 + 11194 mRNA_2826 0.36 -0.8
308,997 + 11194 mRNA_2826 0.47 +0.1
309,058 + 11194 mRNA_2826 0.52 +1.2
309,177 - 11194 mRNA_2826 0.63 +1.3
309,632 + +0.5
309,714 + +0.8

Or see this region's nucleotide sequence