Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2861

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11228 and 11229 are separated by 316 nucleotides11229 and 11230 are separated by 642 nucleotides mRNA_2860: 11228 - K11811 arsH arsenical resistance protein ArsH, at 387,053 to 388,029 11228 mRNA_2861: 11229 - KOG4754 Predicted phosphoglycerate mutase, at 388,346 to 389,336 11229 mRNA_2862: 11230 - PRINTS-Proline rich extensin signature-PR01217, at 389,979 to 392,232 11230

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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387,436 + 11228 mRNA_2860 0.39 +0.5
387,721 + 11228 mRNA_2860 0.68 +0.0
388,269 - +0.7
388,318 + +0.3
388,346 + +1.7
388,428 - -0.7
388,445 - 11229 mRNA_2861 0.10 +1.4
389,476 + -0.5
389,498 - +0.4
389,499 + -1.2
389,501 + +0.6
389,536 + +1.4
389,542 + +0.1
389,624 + +0.2
389,650 - +0.8
389,651 - +0.6
389,658 - -0.1
389,779 - -0.9
389,934 - +0.2
389,944 - -0.0
390,077 - +0.7

Or see this region's nucleotide sequence