Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2866

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11233 and 11234 are separated by 368 nucleotides11234 and 11235 are separated by 419 nucleotides mRNA_2865: 11233 - SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717, at 395,366 to 397,041 11233 mRNA_2866: 11234 - ProSiteProfiles-Myb-like domain profile.-PS50090,SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717,SUPERFAMILY--SSF46689, at 397,410 to 402,844 11234 mRNA_2867: 11235 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 403,264 to 404,865 11235

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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396,697 + 11233 mRNA_2865 0.79 -2.5
397,095 + -0.8
397,316 - +1.0
397,472 - +0.5
398,420 - 11234 mRNA_2866 0.19 -0.3
398,551 - 11234 mRNA_2866 0.21 +0.0
398,663 + 11234 mRNA_2866 0.23 +0.2
398,737 + 11234 mRNA_2866 0.24 -0.0
398,860 - 11234 mRNA_2866 0.27 +1.2
398,986 - 11234 mRNA_2866 0.29 +2.0
399,018 + 11234 mRNA_2866 0.30 -0.0
399,273 + 11234 mRNA_2866 0.34 +0.6
399,335 - 11234 mRNA_2866 0.35 +0.4
399,432 - 11234 mRNA_2866 0.37 -0.8
399,471 - 11234 mRNA_2866 0.38 +0.5
399,706 - 11234 mRNA_2866 0.42 +0.2
399,876 + 11234 mRNA_2866 0.45 -0.2
399,878 + 11234 mRNA_2866 0.45 -0.3
400,153 - 11234 mRNA_2866 0.50 +0.3
400,597 - 11234 mRNA_2866 0.59 -0.3
400,718 - 11234 mRNA_2866 0.61 +1.1
400,750 + 11234 mRNA_2866 0.61 +1.0
400,752 - 11234 mRNA_2866 0.61 +1.0
400,754 + 11234 mRNA_2866 0.62 -0.2
400,795 - 11234 mRNA_2866 0.62 +1.7
400,806 + 11234 mRNA_2866 0.62 +0.7
401,063 - 11234 mRNA_2866 0.67 +1.5
401,077 + 11234 mRNA_2866 0.67 -0.6
401,455 + 11234 mRNA_2866 0.74 +1.3
401,667 - 11234 mRNA_2866 0.78 -0.0
401,815 + 11234 mRNA_2866 0.81 +0.4
401,845 + 11234 mRNA_2866 0.82 +0.5
402,206 + 11234 mRNA_2866 0.88 -0.7
402,208 - 11234 mRNA_2866 0.88 +1.1
402,238 - 11234 mRNA_2866 0.89 -1.3
402,248 - 11234 mRNA_2866 0.89 +0.0
402,251 + 11234 mRNA_2866 0.89 +1.4
402,385 - -0.1
402,389 + +0.1
402,527 + +1.0
402,680 + +1.1
402,973 - +0.9
402,977 + +0.7
403,015 - +1.8
403,389 - +0.5
403,578 + 11235 mRNA_2867 0.20 -0.6

Or see this region's nucleotide sequence