Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2879

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11246 and 11247 are separated by 187 nucleotides mRNA_2878: 11246 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 431,152 to 434,004 11246 mRNA_2879: 11247 - HMMPfam-Protein of unknown function (DUF3237)-PF11578, at 434,192 to 435,080 11247

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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433,200 - 11246 mRNA_2878 0.72 -1.1
433,300 + 11246 mRNA_2878 0.75 +1.3
433,340 - 11246 mRNA_2878 0.77 -0.2
433,444 - 11246 mRNA_2878 0.80 +0.1
433,619 + 11246 mRNA_2878 0.86 +0.7
433,619 + 11246 mRNA_2878 0.86 +0.8
433,768 + +0.6
433,777 + +0.2
433,879 + +0.1
433,900 - -0.1
433,909 + -0.1
433,923 - -0.0
434,033 + +0.3
434,112 - -0.2
434,119 + -0.6
434,120 + -0.5
434,120 - +0.0
434,130 - +0.9
434,243 + +0.1
434,295 - 11247 mRNA_2879 0.12 +0.7
434,697 - 11247 mRNA_2879 0.57 +1.6
434,890 - 11247 mRNA_2879 0.79 -0.2
435,639 + +0.6
435,681 - +1.0
435,712 + +0.7
435,719 - -0.3
435,735 - +1.7
435,767 + +0.6
435,857 + -1.3
435,875 + +0.4
435,880 + -0.3
435,947 + +1.4
435,948 - -0.6
436,005 - +0.3
436,012 - +0.9
436,014 + -2.2
436,016 + +1.3
436,023 + +0.0
436,040 - +1.9
436,049 - +1.3
436,058 - +1.0
436,058 + -0.1
436,060 + +0.3
436,063 + +0.3

Or see this region's nucleotide sequence