Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2892

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11259 and 11260 are separated by 715 nucleotides11260 and 11261 are separated by 364 nucleotides mRNA_2891: 11259 - Hypothetical Protein, at 469,536 to 470,476 11259 mRNA_2892: 11260 - HMMPfam-Protein of unknown function (DUF2823)-PF11034, at 471,192 to 473,300 11260 mRNA_2893: 11261 - HMMPfam-Protein of unknown function (DUF2823)-PF11034, at 473,665 to 474,267 11261

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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471,579 - 11260 mRNA_2892 0.18 +1.3
471,884 - 11260 mRNA_2892 0.33 +0.1
471,986 - 11260 mRNA_2892 0.38 +0.3
472,199 - 11260 mRNA_2892 0.48 -1.4
472,411 + 11260 mRNA_2892 0.58 +1.1
472,456 - 11260 mRNA_2892 0.60 -0.7
472,492 + 11260 mRNA_2892 0.62 -0.1
472,624 - 11260 mRNA_2892 0.68 -0.4
472,629 + 11260 mRNA_2892 0.68 +2.8
472,766 - 11260 mRNA_2892 0.75 -1.1
472,768 - 11260 mRNA_2892 0.75 +0.6
472,786 - 11260 mRNA_2892 0.76 +0.3
472,792 + 11260 mRNA_2892 0.76 +1.0
472,793 + 11260 mRNA_2892 0.76 +0.5
472,800 - 11260 mRNA_2892 0.76 +1.0
472,809 + 11260 mRNA_2892 0.77 +0.0
472,838 - 11260 mRNA_2892 0.78 -2.5
472,839 + 11260 mRNA_2892 0.78 -0.4
472,845 + 11260 mRNA_2892 0.78 +0.1
472,859 - 11260 mRNA_2892 0.79 -0.4
472,886 + 11260 mRNA_2892 0.80 +0.4
472,911 - 11260 mRNA_2892 0.82 +0.7
472,918 - 11260 mRNA_2892 0.82 -0.2
472,924 + 11260 mRNA_2892 0.82 +0.2
473,071 - 11260 mRNA_2892 0.89 +0.1
473,076 - 11260 mRNA_2892 0.89 +0.3
473,094 + -0.1
473,267 - +1.1
473,276 - +0.7
473,389 + -2.8
473,449 + +0.3
473,463 - -0.2
473,471 + +0.0
473,494 + -0.1
473,499 - +0.4
473,499 - +0.7
473,501 - +0.4
473,505 - +0.7
473,525 + +1.3
473,532 + -0.1
473,532 - -0.5
473,533 - -1.4
473,541 - -0.2
473,544 - -1.1
473,547 + +2.7
473,550 - +0.9
473,551 - -1.3
473,552 + -1.1
473,552 + +0.7
473,553 - -0.3
473,562 + +0.5
473,564 - +0.4
473,567 - +0.6
473,570 - +0.5
473,572 + -0.4
473,578 - +0.1
473,585 + -1.1
473,720 + -0.3
473,728 + 11261 mRNA_2893 0.10 +0.9
473,858 + 11261 mRNA_2893 0.32 -0.6
473,872 + 11261 mRNA_2893 0.34 +0.6
473,884 + 11261 mRNA_2893 0.36 +0.5

Or see this region's nucleotide sequence