Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2899

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11266 and 11267 are separated by 437 nucleotides mRNA_2898: 11266 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 483,006 to 488,500 11266 mRNA_2899: 11267 - K15276 SLC35B2, PAPST1 solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2, at 488,938 to 492,084 11267

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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487,989 - +0.7
488,154 + +0.3
488,224 - +0.8
488,235 - +1.5
488,262 + -1.0
488,372 - +0.1
488,389 + +0.1
488,506 - +2.7
488,521 + -0.4
488,534 + -2.2
488,556 + +0.4
488,650 - +1.3
488,712 - -0.3
488,719 + +0.3
488,766 + -0.7
488,806 + +0.6
488,807 - +0.9
488,935 - +0.1
488,937 + -0.2
488,969 - -0.2
488,970 + +0.2
488,997 + -1.1
489,000 + -0.3
489,038 - +2.2
489,553 + 11267 mRNA_2899 0.20 +0.0
489,675 + 11267 mRNA_2899 0.23 -0.0
489,773 + 11267 mRNA_2899 0.27 +0.4
489,878 - 11267 mRNA_2899 0.30 +1.0
489,970 - 11267 mRNA_2899 0.33 +0.0
489,988 - 11267 mRNA_2899 0.33 +0.8
490,005 - 11267 mRNA_2899 0.34 +1.2
490,995 - 11267 mRNA_2899 0.65 -0.9
491,034 + 11267 mRNA_2899 0.67 +0.7
491,116 + 11267 mRNA_2899 0.69 +2.0
491,250 + 11267 mRNA_2899 0.73 -0.7
491,363 - 11267 mRNA_2899 0.77 +3.3
491,396 - 11267 mRNA_2899 0.78 +0.5
491,402 + 11267 mRNA_2899 0.78 +0.9
491,825 - +0.7
492,271 + -0.6
492,515 - +1.2
492,597 + +0.9
492,607 + +1.0
492,686 - -1.2
492,716 - -0.2
492,778 + +2.3
492,872 - +1.3
492,889 + -0.0

Or see this region's nucleotide sequence