Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2908

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11275 and 11276 are separated by 104 nucleotides11276 and 11277 are separated by 421 nucleotides mRNA_2907: 11275 - HMMPfam-FAD dependent oxidoreductase-PF01266,SUPERFAMILY--SSF51971, at 510,278 to 512,745 11275 mRNA_2908: 11276 - KOG3098 Uncharacterized conserved protein, at 512,850 to 515,031 11276 mRNA_2909: 11277 - Hypothetical Protein, at 515,453 to 516,872 11277

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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512,080 - 11275 mRNA_2907 0.73 -1.1
512,083 + 11275 mRNA_2907 0.73 -0.9
512,122 + 11275 mRNA_2907 0.75 +1.3
512,243 - 11275 mRNA_2907 0.80 -1.6
512,542 - +0.7
512,692 + +0.7
512,702 - -0.3
512,941 + -0.2
513,269 - 11276 mRNA_2908 0.19 -1.1
513,336 - 11276 mRNA_2908 0.22 +0.1
513,362 - 11276 mRNA_2908 0.23 +0.8
513,382 + 11276 mRNA_2908 0.24 -0.1
513,497 + 11276 mRNA_2908 0.30 +0.6
513,531 + 11276 mRNA_2908 0.31 -0.4
513,569 + 11276 mRNA_2908 0.33 +0.6
513,571 - 11276 mRNA_2908 0.33 -0.3
513,601 - 11276 mRNA_2908 0.34 +1.0
513,617 - 11276 mRNA_2908 0.35 -0.1
513,617 - 11276 mRNA_2908 0.35 +0.6
513,624 + 11276 mRNA_2908 0.35 +0.4
513,629 - 11276 mRNA_2908 0.36 +0.4
513,631 + 11276 mRNA_2908 0.36 -0.5
513,640 + 11276 mRNA_2908 0.36 +0.1
513,643 - 11276 mRNA_2908 0.36 +0.6
513,680 + 11276 mRNA_2908 0.38 -0.3
513,683 - 11276 mRNA_2908 0.38 -1.2
514,285 + 11276 mRNA_2908 0.66 -0.3
514,404 + 11276 mRNA_2908 0.71 -0.1
514,659 - 11276 mRNA_2908 0.83 +0.2
514,674 + 11276 mRNA_2908 0.84 +1.6
514,722 - 11276 mRNA_2908 0.86 +0.9
514,777 + 11276 mRNA_2908 0.88 -0.4
515,006 + +0.2
515,591 - -0.5
515,591 - -2.3
515,656 - 11277 mRNA_2909 0.14 -0.7
515,787 + 11277 mRNA_2909 0.24 +0.6

Or see this region's nucleotide sequence