Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2918

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11286 and 11287 are separated by 734 nucleotides mRNA_2918: 11286 - HMMPfam-Acetyltransferase (GNAT) domain-PF13523,SMART-Siderophore biosynthesis protein domain-SM01006,SUPERFAMILY--SSF55729, at 554,033 to 555,107 11286 mRNA_2919: 11287 - BLAST Protein FAM186A [Mus musculus] [Rhizoctonia solani], at 555,842 to 558,142 11287

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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553,042 - +1.5
553,077 + +1.1
553,126 + +1.3
553,265 - -1.6
553,268 - -0.5
553,274 - +0.4
553,284 + -1.4
553,284 - -0.4
553,335 + -1.7
553,339 + -1.2
553,342 + -0.2
553,431 + +0.4
553,433 + +0.6
553,468 + +0.4
553,574 - +1.1
553,580 - +0.2
553,580 - +0.4
553,590 + +0.5
553,597 + +0.5
553,692 + -0.8
553,800 + -0.1
553,869 + +1.1
553,887 + +0.6
554,152 + 11286 mRNA_2918 0.11 -0.1
554,435 - 11286 mRNA_2918 0.37 +0.1
554,460 - 11286 mRNA_2918 0.40 +1.3
555,123 + +1.7
555,321 + -0.3
555,463 - +0.8
555,478 + +2.2
555,770 + +0.1
555,770 + +0.6
555,773 - -0.0
555,790 + -0.4
555,807 + +2.1
555,940 + -0.4
555,968 + +0.4
556,080 - 11287 mRNA_2919 0.10 -0.2
556,092 + 11287 mRNA_2919 0.11 -0.1

Or see this region's nucleotide sequence