Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2958

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11325 and 11326 are separated by 858 nucleotides mRNA_2957: 11325 - Hypothetical Protein, at 645,332 to 646,636 11325 mRNA_2958: 11326 - K17907 ATG9 autophagy-related protein 9, at 647,495 to 650,461 11326

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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646,603 + -0.2
646,635 + -0.6
646,744 - -0.0
646,747 + +2.2
646,821 - +0.4
646,894 - +0.8
647,166 + +0.2
647,168 - +0.2
647,213 + +0.3
647,321 - +2.4
647,607 - +1.0
647,612 - +1.9
647,612 - +0.7
647,612 - +2.2
647,612 - +0.1
647,624 - -1.1
647,635 - +0.9
647,763 - +0.1
647,767 + +2.0
648,061 + 11326 mRNA_2958 0.19 +2.1
648,241 + 11326 mRNA_2958 0.25 -0.2
648,369 - 11326 mRNA_2958 0.29 -0.4
648,509 + 11326 mRNA_2958 0.34 +1.4
648,754 - 11326 mRNA_2958 0.42 +0.2
649,221 + 11326 mRNA_2958 0.58 +0.2
649,260 + 11326 mRNA_2958 0.59 -1.4
649,369 + 11326 mRNA_2958 0.63 +0.0
649,649 - 11326 mRNA_2958 0.73 -0.5
649,652 - 11326 mRNA_2958 0.73 -0.7
650,273 + +1.6
650,377 - +0.1
650,566 + +0.4
650,688 - +0.1
651,118 + +1.4
651,134 - +0.0
651,142 + -0.0
651,289 + -0.2
651,299 + -0.8
651,386 + +1.3
651,447 + -0.3
651,450 - +0.1

Or see this region's nucleotide sequence