Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2992

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11359 and 11360 are separated by 593 nucleotides mRNA_2991: 11359 - SUPERFAMILY--SSF50685, at 25,748 to 27,268 11359 mRNA_2992: 11360 - Hypothetical Protein, at 27,862 to 28,502 11360

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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26,899 + 11359 mRNA_2991 0.76 -1.1
26,941 - 11359 mRNA_2991 0.78 +0.4
27,032 + 11359 mRNA_2991 0.84 +0.3
27,036 + 11359 mRNA_2991 0.85 +0.1
27,163 + -0.6
27,297 - +0.8
27,305 - -0.6
27,327 + -0.4
27,453 + +0.0
27,474 + -0.2
27,485 + +0.8
27,500 + +0.7
27,622 - +0.3
27,774 + +2.0
27,796 + -1.4
28,285 - 11360 mRNA_2992 0.66 +1.0
28,331 - 11360 mRNA_2992 0.73 -0.4
28,384 - 11360 mRNA_2992 0.81 +0.3
28,393 + 11360 mRNA_2992 0.83 +1.1
28,456 - +0.6
28,493 + -1.0
28,571 - -0.5
28,633 - -0.3
28,729 - +0.9
28,820 + -0.2
28,820 + +2.5
28,895 - -0.1
28,907 - +1.5
28,952 + +1.2
28,952 + +0.8
28,981 - -0.8
29,069 + -1.3
29,212 + +0.2
29,317 + +0.7
29,361 - +0.6
29,390 - +0.6
29,393 + -0.2
29,449 + -0.4
29,479 - +0.4
29,490 + +1.2

Or see this region's nucleotide sequence