Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3009

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11376 and 11377 are separated by 186 nucleotides11377 and 11378 are separated by 381 nucleotides mRNA_3008: 11376 - HMMPfam-Inositol hexakisphosphate-PF14566,SUPERFAMILY--SSF52799, at 60,118 to 65,560 11376 mRNA_3009: 11377 - Hypothetical Protein, at 65,747 to 66,498 11377 mRNA_3010: 11378 - K10398 KIF11, EG5 kinesin family member 11, at 66,880 to 69,062 11378

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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64,977 + 11376 mRNA_3008 0.89 +0.5
65,134 + -0.7
65,145 + -0.8
65,154 - +0.6
65,160 + +2.3
65,185 + -0.2
65,286 - -0.9
65,300 - +0.8
65,314 + +0.2
65,329 - +0.4
65,408 + -0.2
65,414 - +0.6
65,457 - -0.6
65,466 - -0.1
65,570 + +0.2
65,591 + -0.7
65,595 + +0.4
65,601 + -0.1
65,620 + +0.4
65,727 - +0.1
65,758 + +0.7
65,912 - 11377 mRNA_3009 0.22 -0.2
65,913 + 11377 mRNA_3009 0.22 -0.7
65,914 + 11377 mRNA_3009 0.22 -0.4
65,918 + 11377 mRNA_3009 0.23 -0.5
65,939 - 11377 mRNA_3009 0.26 +0.8
65,941 + 11377 mRNA_3009 0.26 +1.9
66,007 + 11377 mRNA_3009 0.35 +0.9
66,015 - 11377 mRNA_3009 0.36 +0.3
66,018 + 11377 mRNA_3009 0.36 -1.7
66,033 + 11377 mRNA_3009 0.38 -0.1
66,052 - 11377 mRNA_3009 0.41 +0.5
66,073 - 11377 mRNA_3009 0.43 +0.5
66,077 - 11377 mRNA_3009 0.44 +1.1
66,335 - 11377 mRNA_3009 0.78 +1.2
66,651 - +0.9
66,782 - +0.3
66,813 + +0.6
66,820 + +0.0
66,821 - +0.9
66,825 - +1.1
66,829 - -0.5
66,834 + +1.1
66,834 - +0.7
66,834 - +0.6
66,835 + +0.2
66,839 - -0.1
66,840 + +1.7
66,841 + -0.1
66,843 + +0.1
66,851 + +0.6
66,852 - -1.3
66,852 - +0.3
66,977 + +1.0
66,981 + -0.6
66,983 + +2.6
66,992 - +2.2
66,993 + +0.2
67,169 + 11378 mRNA_3010 0.13 -0.3
67,171 - 11378 mRNA_3010 0.13 -0.0
67,172 - 11378 mRNA_3010 0.13 +0.8
67,427 + 11378 mRNA_3010 0.25 +1.9
67,431 + 11378 mRNA_3010 0.25 -1.0

Or see this region's nucleotide sequence