Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3061

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11428 and 11429 are separated by 484 nucleotides11429 and 11430 are separated by 350 nucleotides mRNA_3060: 11428 - K13115 CCDC130 coiled-coil domain-containing protein 130, at 219,691 to 221,317 11428 mRNA_3061: 11429 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 221,802 to 224,881 11429 mRNA_3062: 11430 - SUPERFAMILY--SSF49899, at 225,232 to 227,100 11430

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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221,253 + -1.0
221,380 - +0.8
221,387 + -0.1
221,397 + +0.0
221,489 - -0.0
221,818 + +0.2
221,962 + +0.9
222,113 + 11429 mRNA_3061 0.10 +0.8
222,222 - 11429 mRNA_3061 0.14 +0.5
222,241 - 11429 mRNA_3061 0.14 -0.8
222,268 - 11429 mRNA_3061 0.15 +0.0
222,529 + 11429 mRNA_3061 0.24 +0.6
222,653 - 11429 mRNA_3061 0.28 +1.3
222,710 + 11429 mRNA_3061 0.29 -0.6
222,940 - 11429 mRNA_3061 0.37 -0.7
222,971 - 11429 mRNA_3061 0.38 -0.4
222,976 - 11429 mRNA_3061 0.38 -1.1
223,276 - 11429 mRNA_3061 0.48 +1.3
223,302 - 11429 mRNA_3061 0.49 +0.3
223,308 - 11429 mRNA_3061 0.49 +0.5
223,384 - 11429 mRNA_3061 0.51 -0.1
223,421 + 11429 mRNA_3061 0.53 +0.7
223,463 - 11429 mRNA_3061 0.54 +1.1
223,483 - 11429 mRNA_3061 0.55 +0.2
223,556 + 11429 mRNA_3061 0.57 -0.3
223,598 + 11429 mRNA_3061 0.58 +1.0
223,604 + 11429 mRNA_3061 0.59 +0.9
223,660 - 11429 mRNA_3061 0.60 +0.2
223,676 - 11429 mRNA_3061 0.61 +0.6
223,700 + 11429 mRNA_3061 0.62 +0.2
223,851 + 11429 mRNA_3061 0.67 +1.0
223,926 + 11429 mRNA_3061 0.69 -0.1
224,006 + 11429 mRNA_3061 0.72 -0.2
224,016 - 11429 mRNA_3061 0.72 -0.1
224,130 - 11429 mRNA_3061 0.76 +0.5
224,567 - 11429 mRNA_3061 0.90 -0.1
224,586 + +1.1
224,587 - +0.2
224,626 - +2.3
224,700 + -0.6
224,815 + -0.8
224,822 - +0.6
224,847 + -0.8
224,854 - +0.9
224,866 + +0.2
224,872 + +0.0
224,957 + +0.1
225,033 + -0.0
225,103 - +1.3
225,135 - +0.5
225,138 + +0.8
225,140 + -3.0
225,140 - -0.1
225,142 + +0.2
225,146 + +0.1
225,147 + +1.0
225,148 + -0.2
225,158 + -1.0
225,264 + +0.8
225,334 - -0.2
225,340 - +1.5
225,347 + +1.3
225,450 - 11430 mRNA_3062 0.12 +1.1
225,473 + 11430 mRNA_3062 0.13 +0.3
225,555 + 11430 mRNA_3062 0.17 +0.2
225,594 - 11430 mRNA_3062 0.19 +1.8
225,610 - 11430 mRNA_3062 0.20 -0.2
225,610 + 11430 mRNA_3062 0.20 +1.0
225,636 - 11430 mRNA_3062 0.22 -0.1
225,644 + 11430 mRNA_3062 0.22 +1.3
225,646 - 11430 mRNA_3062 0.22 +0.2
225,651 - 11430 mRNA_3062 0.22 -0.1
225,705 + 11430 mRNA_3062 0.25 +1.4
225,706 - 11430 mRNA_3062 0.25 +0.2
225,748 - 11430 mRNA_3062 0.28 +0.6
225,761 - 11430 mRNA_3062 0.28 +0.0
225,840 + 11430 mRNA_3062 0.33 +0.4
225,867 + 11430 mRNA_3062 0.34 -0.3
225,880 + 11430 mRNA_3062 0.35 +0.1

Or see this region's nucleotide sequence