Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3075

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11442 and 11443 are separated by 218 nucleotides mRNA_3074: 11442 - KOG4650 Predicted steroid reductase, at 250,206 to 251,968 11442 mRNA_3075: 11443 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 252,187 to 260,484 11443

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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251,443 - 11442 mRNA_3074 0.70 +0.1
251,570 - 11442 mRNA_3074 0.77 +0.6
251,577 + 11442 mRNA_3074 0.78 +0.8
251,720 + 11442 mRNA_3074 0.86 +0.2
251,734 - 11442 mRNA_3074 0.87 +0.3
251,738 + 11442 mRNA_3074 0.87 +0.4
251,739 + 11442 mRNA_3074 0.87 +1.6
251,739 - 11442 mRNA_3074 0.87 +1.6
251,761 + 11442 mRNA_3074 0.88 +0.0
251,833 + -0.0
251,853 - -0.6
251,854 + -0.4
251,867 + +0.4
251,869 + +0.4
251,879 + +0.4
251,891 + -0.6
251,896 - +0.3
251,980 - +0.9
251,981 + +0.9
251,988 - +0.7
252,011 + +1.3
252,031 - +1.0
252,043 + -1.8
252,043 + +0.4
252,051 - +0.6
252,054 + -0.1
252,054 + +0.4
252,057 - -0.2
252,073 - +1.9
252,176 - -0.3
252,176 - -0.9
252,205 - +0.8
252,342 + +1.7
252,437 + +0.5
252,453 + +0.9
252,501 + +0.3
252,541 + +0.3
252,647 - +0.9
252,653 + +0.0
252,777 + -0.9
252,914 + +0.4
252,917 + +0.8
253,133 + 11443 mRNA_3075 0.11 -1.1
253,366 - 11443 mRNA_3075 0.14 +1.0
253,450 - 11443 mRNA_3075 0.15 -0.9
253,463 - 11443 mRNA_3075 0.15 +0.8
253,511 - 11443 mRNA_3075 0.16 -0.4
253,525 + 11443 mRNA_3075 0.16 -0.3
253,538 + 11443 mRNA_3075 0.16 -0.2
253,540 - 11443 mRNA_3075 0.16 +0.9
253,559 - 11443 mRNA_3075 0.17 +0.7
253,605 + 11443 mRNA_3075 0.17 -1.2
253,617 + 11443 mRNA_3075 0.17 -3.1
253,624 + 11443 mRNA_3075 0.17 +0.0
253,636 - 11443 mRNA_3075 0.17 +0.6
253,648 - 11443 mRNA_3075 0.18 +0.9
253,660 - 11443 mRNA_3075 0.18 -1.1
253,709 - 11443 mRNA_3075 0.18 -0.9
253,803 - 11443 mRNA_3075 0.19 +0.7
253,906 + 11443 mRNA_3075 0.21 +1.5
253,915 + 11443 mRNA_3075 0.21 -0.2
253,963 + 11443 mRNA_3075 0.21 +0.8
253,971 - 11443 mRNA_3075 0.21 -1.5
254,081 - 11443 mRNA_3075 0.23 +0.2
254,085 + 11443 mRNA_3075 0.23 +0.8
254,207 + 11443 mRNA_3075 0.24 +0.5
254,263 - 11443 mRNA_3075 0.25 -1.4
254,269 + 11443 mRNA_3075 0.25 +1.0
254,338 - 11443 mRNA_3075 0.26 -0.2
254,372 - 11443 mRNA_3075 0.26 +0.4
254,418 - 11443 mRNA_3075 0.27 +1.8
254,539 - 11443 mRNA_3075 0.28 +0.4
254,585 + 11443 mRNA_3075 0.29 +1.2
254,706 + 11443 mRNA_3075 0.30 +0.7
254,710 - 11443 mRNA_3075 0.30 +1.4
254,712 + 11443 mRNA_3075 0.30 +0.3
254,797 - 11443 mRNA_3075 0.31 +0.2
254,868 + 11443 mRNA_3075 0.32 +0.0
254,972 + 11443 mRNA_3075 0.34 +0.1
255,080 + 11443 mRNA_3075 0.35 +1.5
255,136 - 11443 mRNA_3075 0.36 -0.0
255,157 + 11443 mRNA_3075 0.36 -0.4
255,295 - 11443 mRNA_3075 0.37 +0.1
255,303 + 11443 mRNA_3075 0.38 +0.9
255,544 + 11443 mRNA_3075 0.40 +1.4
255,585 + 11443 mRNA_3075 0.41 -0.4
255,609 - 11443 mRNA_3075 0.41 +0.9
255,644 - 11443 mRNA_3075 0.42 +0.4
255,685 - 11443 mRNA_3075 0.42 -0.9
255,734 - 11443 mRNA_3075 0.43 +0.3
255,768 + 11443 mRNA_3075 0.43 +0.9
255,834 + 11443 mRNA_3075 0.44 +0.3
255,834 + 11443 mRNA_3075 0.44 -0.2
255,920 + 11443 mRNA_3075 0.45 +0.7
255,921 - 11443 mRNA_3075 0.45 +0.9
255,938 - 11443 mRNA_3075 0.45 -0.6
256,163 + 11443 mRNA_3075 0.48 +1.9
256,179 - 11443 mRNA_3075 0.48 -0.5
256,216 - 11443 mRNA_3075 0.49 +2.3
256,241 - 11443 mRNA_3075 0.49 +1.2
256,280 - 11443 mRNA_3075 0.49 +1.2
256,353 - 11443 mRNA_3075 0.50 +0.0
256,358 - 11443 mRNA_3075 0.50 +0.9
256,369 - 11443 mRNA_3075 0.50 +2.0
256,517 + 11443 mRNA_3075 0.52 +0.3
256,587 - 11443 mRNA_3075 0.53 +1.0
256,692 - 11443 mRNA_3075 0.54 -0.8
256,892 - 11443 mRNA_3075 0.57 +0.9
256,940 + 11443 mRNA_3075 0.57 -0.3
257,031 - 11443 mRNA_3075 0.58 +0.9
257,050 - 11443 mRNA_3075 0.59 -0.1
257,105 - 11443 mRNA_3075 0.59 -0.8
257,195 - 11443 mRNA_3075 0.60 +0.1
257,227 + 11443 mRNA_3075 0.61 +1.7
257,346 + 11443 mRNA_3075 0.62 +1.7
257,355 + 11443 mRNA_3075 0.62 +1.0
257,484 - 11443 mRNA_3075 0.64 +0.5
257,536 + 11443 mRNA_3075 0.64 -1.1
257,588 + 11443 mRNA_3075 0.65 +0.0
257,620 - 11443 mRNA_3075 0.65 +0.0
257,638 - 11443 mRNA_3075 0.66 +0.1
257,901 + 11443 mRNA_3075 0.69 +0.3
258,000 + 11443 mRNA_3075 0.70 +0.7
258,221 - 11443 mRNA_3075 0.73 -0.7
258,430 - 11443 mRNA_3075 0.75 +2.3
258,434 - 11443 mRNA_3075 0.75 +2.3
258,726 + 11443 mRNA_3075 0.79 -0.6
258,750 - 11443 mRNA_3075 0.79 +1.1
258,759 - 11443 mRNA_3075 0.79 -0.6
258,764 + 11443 mRNA_3075 0.79 +0.4
258,900 - 11443 mRNA_3075 0.81 +0.6
258,942 + 11443 mRNA_3075 0.81 +0.6
258,989 + 11443 mRNA_3075 0.82 +0.3
259,069 + 11443 mRNA_3075 0.83 +0.5
259,138 + 11443 mRNA_3075 0.84 +0.1
259,160 - 11443 mRNA_3075 0.84 +3.0
259,193 + 11443 mRNA_3075 0.84 +1.1
259,471 - 11443 mRNA_3075 0.88 +1.1
259,474 - 11443 mRNA_3075 0.88 +1.0
259,481 + 11443 mRNA_3075 0.88 +0.2
259,482 + 11443 mRNA_3075 0.88 +0.3
259,497 - 11443 mRNA_3075 0.88 +0.7
259,543 + 11443 mRNA_3075 0.89 +1.3
259,565 - 11443 mRNA_3075 0.89 +0.1
259,568 + 11443 mRNA_3075 0.89 -0.4
259,671 + +2.5
259,937 - +0.2
259,953 + +0.7
259,964 - -1.8
260,105 - +0.2
260,221 + +0.8
260,273 + -0.0
260,633 - +1.6
260,657 - +0.7
260,796 - +0.3
260,815 + +0.5
260,966 + -0.8
261,095 - +1.3
261,242 - +0.5
261,260 + -0.3
261,261 - +0.9
261,265 + -0.2
261,269 - +0.4
261,390 - +1.0
261,391 + +0.7
261,396 - +0.2
261,400 - -0.5
261,400 - -1.3
261,401 + +0.3
261,412 - +0.3
261,415 + -1.5
261,419 + -0.8
261,420 + +3.1
261,420 - -0.0
261,427 - -0.1
261,427 + -0.2
261,428 - +0.1
261,429 + +0.3
261,432 - +0.9
261,438 - -1.2
261,440 - -0.5
261,440 - +0.6
261,442 - +1.9
261,442 - +0.4
261,443 - +0.3
261,443 - +0.9
261,445 - -0.0
261,449 + -0.2
261,449 + +0.7
261,451 - -0.1
261,454 - -1.2
261,456 - -0.3
261,459 + +1.1
261,478 + +0.2

Or see this region's nucleotide sequence