Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3095

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11462 and 11463 are separated by 232 nucleotides11463 and 11464 are separated by 251 nucleotides mRNA_3094: 11462 - HMMPfam-Bestrophin, RFP-TM, chloride channel-PF01062, at 305,611 to 307,227 11462 mRNA_3095: 11463 - K01739 metB cystathionine gamma-synthase, at 307,460 to 310,020 11463 mRNA_3096: 11464 - K17262 TBCB, CKAP1, ALF1 tubulin-folding cofactor B, at 310,272 to 311,367 11464

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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306,724 + 11462 mRNA_3094 0.69 +0.7
306,852 - 11462 mRNA_3094 0.77 +0.1
306,857 - 11462 mRNA_3094 0.77 +0.4
306,973 - 11462 mRNA_3094 0.84 +0.4
307,007 - 11462 mRNA_3094 0.86 +1.1
307,139 - -0.1
307,145 + +1.0
307,151 + +0.7
307,152 - +1.4
307,259 - +2.5
307,268 - +0.4
307,269 + +1.5
307,271 + -0.1
307,273 - +0.0
307,273 - -0.3
307,274 + +0.3
307,278 + -0.6
307,281 + -0.0
307,284 - +0.4
307,288 + +0.4
307,290 + -0.0
307,294 + -0.1
307,294 + -0.4
307,294 - -0.1
307,297 + +0.7
307,297 - -1.3
307,300 + +3.2
307,302 + +0.3
307,303 - +0.6
307,304 + +0.7
307,305 + +0.4
307,305 + +0.6
307,308 - -0.6
307,312 - -0.7
307,326 + +0.2
307,332 + -0.2
307,333 + +0.8
307,336 - -0.3
307,344 + +0.6
307,353 + -0.6
307,408 + +1.5
307,449 + -0.5
307,475 - +0.8
307,621 - -0.4
307,728 - 11463 mRNA_3095 0.10 -0.4
307,765 - 11463 mRNA_3095 0.12 +0.5
307,774 + 11463 mRNA_3095 0.12 -0.6
307,776 + 11463 mRNA_3095 0.12 +1.2
307,780 - 11463 mRNA_3095 0.12 -2.0
307,781 + 11463 mRNA_3095 0.13 -0.1
307,902 - 11463 mRNA_3095 0.17 -0.4
308,226 - 11463 mRNA_3095 0.30 +0.1
308,277 - 11463 mRNA_3095 0.32 +0.7
308,610 - 11463 mRNA_3095 0.45 +2.5
308,690 + 11463 mRNA_3095 0.48 -2.2
308,754 - 11463 mRNA_3095 0.51 -1.1
308,754 - 11463 mRNA_3095 0.51 +0.4
309,190 + 11463 mRNA_3095 0.68 +0.8
309,341 - 11463 mRNA_3095 0.73 +0.4
309,354 - 11463 mRNA_3095 0.74 +1.2
309,460 - 11463 mRNA_3095 0.78 +1.5
309,505 + 11463 mRNA_3095 0.80 -0.2
309,515 - 11463 mRNA_3095 0.80 +1.1
309,591 - 11463 mRNA_3095 0.83 +1.9
309,647 + 11463 mRNA_3095 0.85 +1.5
309,662 - 11463 mRNA_3095 0.86 +0.3
309,768 + +0.5
309,777 - +0.0
309,782 - +0.1
309,796 - +1.4
309,800 - -0.9
309,936 + +1.1
309,968 + -1.4
309,970 + +0.3
309,984 + +1.9
310,058 + +1.2
310,075 + +0.4
310,081 + +1.7
310,084 - +0.6
310,087 + +0.3
310,096 - +0.1
310,097 + +0.6
310,105 + -1.9
310,107 + -0.1
310,108 - +1.7
310,113 - +1.5
310,122 - -0.4
310,123 + -0.2
310,155 - -0.2
310,249 - -0.9
310,255 + +0.4
310,264 - -0.1
310,272 - +0.4
310,276 + +0.5
310,293 + +3.0
310,375 + +0.7
310,387 + 11464 mRNA_3096 0.10 +0.1
310,397 - 11464 mRNA_3096 0.11 -0.9
310,397 - 11464 mRNA_3096 0.11 +1.2
310,399 - 11464 mRNA_3096 0.12 -0.2
310,403 + 11464 mRNA_3096 0.12 -0.8
310,407 + 11464 mRNA_3096 0.12 +0.3
310,415 + 11464 mRNA_3096 0.13 -0.1
310,423 + 11464 mRNA_3096 0.14 +0.2
310,509 - 11464 mRNA_3096 0.22 +0.6
310,520 + 11464 mRNA_3096 0.23 +0.2
310,531 - 11464 mRNA_3096 0.24 +0.2
310,550 - 11464 mRNA_3096 0.25 +0.5
310,563 + 11464 mRNA_3096 0.27 +0.3
310,566 - 11464 mRNA_3096 0.27 +1.0
310,571 - 11464 mRNA_3096 0.27 -1.4
310,692 + 11464 mRNA_3096 0.38 +0.5
310,693 + 11464 mRNA_3096 0.38 -0.5
310,851 + 11464 mRNA_3096 0.53 +0.8
310,993 - 11464 mRNA_3096 0.66 +0.5

Or see this region's nucleotide sequence