Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3113

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11480 and 11481 are separated by 383 nucleotides11481 and 11482 are separated by 449 nucleotides mRNA_3112: 11480 - Hypothetical Protein, at 351,079 to 352,331 11480 mRNA_3113: 11481 - K11361 SPT20, ADA5 transcription factor SPT20, at 352,715 to 353,874 11481 mRNA_3114: 11482 - BLAST c6 zinc finger domain containing protein [Diplodia co..., at 354,324 to 355,899 11482

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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351,716 + 11480 mRNA_3112 0.51 +0.4
351,725 - 11480 mRNA_3112 0.52 +0.2
351,753 - 11480 mRNA_3112 0.54 +1.5
351,772 - 11480 mRNA_3112 0.55 +0.5
351,775 - 11480 mRNA_3112 0.56 +0.7
351,923 + 11480 mRNA_3112 0.67 +1.3
352,060 - 11480 mRNA_3112 0.78 +0.9
352,062 - 11480 mRNA_3112 0.78 +0.1
352,175 + 11480 mRNA_3112 0.87 -1.2
352,240 - +0.1
352,271 + +1.1
352,355 + -0.8
352,469 - +0.4
352,487 + +0.5
352,652 + -0.2
352,663 - +0.0
352,670 + +0.3
352,670 + +1.8
352,689 + +0.0
352,791 - +0.4
352,922 - 11481 mRNA_3113 0.18 +0.1
352,971 - 11481 mRNA_3113 0.22 -1.1
353,052 - 11481 mRNA_3113 0.29 +0.5
353,069 - 11481 mRNA_3113 0.31 -0.7
353,200 + 11481 mRNA_3113 0.42 -0.7
353,347 - 11481 mRNA_3113 0.54 +0.3
353,364 + 11481 mRNA_3113 0.56 -1.6
353,502 + 11481 mRNA_3113 0.68 -0.2
353,507 - 11481 mRNA_3113 0.68 +0.3
353,537 - 11481 mRNA_3113 0.71 -0.5
353,604 + 11481 mRNA_3113 0.77 -0.7
353,668 + 11481 mRNA_3113 0.82 +0.5
353,774 - +1.7
353,781 + +0.8
353,783 - +1.1
353,795 - +0.1
353,805 + +1.1
353,967 + +0.9
353,976 + -1.1
354,041 - -0.5
354,076 - +1.2
354,078 - +1.2
354,083 + +1.4
354,087 - +0.6
354,089 + -0.4
354,091 + +0.7
354,094 - +0.7
354,097 + -0.1
354,100 + +0.8
354,101 - -0.4
354,103 + -1.0
354,223 - +0.4
354,248 + -0.8
354,266 + -0.5
354,519 - 11482 mRNA_3114 0.12 -2.1
354,538 + 11482 mRNA_3114 0.14 +2.3
354,557 - 11482 mRNA_3114 0.15 +1.3
354,670 - 11482 mRNA_3114 0.22 -0.3

Or see this region's nucleotide sequence