Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3151

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11518 and 11519 are separated by 159 nucleotides11519 and 11520 are separated by 670 nucleotides mRNA_3150: 11518 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 435,030 to 436,321 11518 mRNA_3151: 11519 - Hypothetical Protein, at 436,481 to 438,109 11519 mRNA_3152: 11520 - Interpro PET assembly of cytochrome c oxidase, mitochondrial, at 438,780 to 439,151 11520

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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435,484 + 11518 mRNA_3150 0.35 -0.5
435,485 + 11518 mRNA_3150 0.35 +2.0
435,564 - 11518 mRNA_3150 0.41 +0.9
435,571 + 11518 mRNA_3150 0.42 -0.4
435,684 - 11518 mRNA_3150 0.51 +0.4
435,702 + 11518 mRNA_3150 0.52 +0.8
435,718 - 11518 mRNA_3150 0.53 +0.6
435,843 - 11518 mRNA_3150 0.63 +0.6
435,865 + 11518 mRNA_3150 0.65 +1.2
435,979 - 11518 mRNA_3150 0.73 +0.6
436,001 - 11518 mRNA_3150 0.75 +0.7
436,102 - 11518 mRNA_3150 0.83 +0.3
436,241 + +0.7
436,445 + +1.1
436,643 + +0.2
436,712 - 11519 mRNA_3151 0.14 +0.3
436,734 - 11519 mRNA_3151 0.16 +0.1
436,799 + 11519 mRNA_3151 0.20 -0.7
436,895 + 11519 mRNA_3151 0.25 +1.1
436,901 + 11519 mRNA_3151 0.26 -1.0
437,009 - 11519 mRNA_3151 0.32 -0.5
437,041 + 11519 mRNA_3151 0.34 +0.9
437,214 - 11519 mRNA_3151 0.45 +1.2
437,264 + 11519 mRNA_3151 0.48 -1.5
437,296 + 11519 mRNA_3151 0.50 +0.6
437,300 + 11519 mRNA_3151 0.50 -0.3
437,300 - 11519 mRNA_3151 0.50 -0.4
437,303 - 11519 mRNA_3151 0.50 +0.3
437,315 - 11519 mRNA_3151 0.51 -0.6
437,328 - 11519 mRNA_3151 0.52 +0.8
437,329 + 11519 mRNA_3151 0.52 +1.1
437,445 - 11519 mRNA_3151 0.59 -1.2
437,445 - 11519 mRNA_3151 0.59 +1.8
437,488 - 11519 mRNA_3151 0.62 +0.1
437,491 + 11519 mRNA_3151 0.62 -1.8
437,493 - 11519 mRNA_3151 0.62 +0.9
437,504 + 11519 mRNA_3151 0.63 -2.5
437,524 - 11519 mRNA_3151 0.64 -0.7
437,547 - 11519 mRNA_3151 0.65 +1.0
437,639 + 11519 mRNA_3151 0.71 +0.2
437,650 + 11519 mRNA_3151 0.72 +0.3
437,673 - 11519 mRNA_3151 0.73 +0.7
437,673 + 11519 mRNA_3151 0.73 -0.5
437,682 - 11519 mRNA_3151 0.74 +1.1
437,694 + 11519 mRNA_3151 0.74 +0.4
437,717 + 11519 mRNA_3151 0.76 +1.0
437,736 - 11519 mRNA_3151 0.77 +1.6
437,763 + 11519 mRNA_3151 0.79 +0.6
437,781 + 11519 mRNA_3151 0.80 -1.1
437,786 - 11519 mRNA_3151 0.80 -0.2
437,793 + 11519 mRNA_3151 0.81 +1.9
437,803 - 11519 mRNA_3151 0.81 -0.1
437,811 + 11519 mRNA_3151 0.82 -0.1
437,818 - 11519 mRNA_3151 0.82 -0.4
437,818 - 11519 mRNA_3151 0.82 +0.5
437,819 + 11519 mRNA_3151 0.82 -2.0
437,820 - 11519 mRNA_3151 0.82 +1.2
437,825 - 11519 mRNA_3151 0.83 +0.8
437,826 - 11519 mRNA_3151 0.83 +0.4
437,828 - 11519 mRNA_3151 0.83 +1.6
437,828 - 11519 mRNA_3151 0.83 -0.9
437,830 - 11519 mRNA_3151 0.83 -0.6
437,832 + 11519 mRNA_3151 0.83 +0.2
437,833 - 11519 mRNA_3151 0.83 -0.3
437,835 - 11519 mRNA_3151 0.83 -0.3
437,836 - 11519 mRNA_3151 0.83 -0.2
437,836 + 11519 mRNA_3151 0.83 +0.5
437,836 + 11519 mRNA_3151 0.83 -0.1
437,839 - 11519 mRNA_3151 0.83 -0.7
437,840 - 11519 mRNA_3151 0.83 -0.3
437,840 - 11519 mRNA_3151 0.83 +1.8
437,842 - 11519 mRNA_3151 0.84 +0.6
437,843 + 11519 mRNA_3151 0.84 -0.9
437,844 - 11519 mRNA_3151 0.84 -0.2
437,845 + 11519 mRNA_3151 0.84 -0.1
437,846 - 11519 mRNA_3151 0.84 -0.3
437,847 + 11519 mRNA_3151 0.84 -1.3
437,847 + 11519 mRNA_3151 0.84 +1.2
437,847 + 11519 mRNA_3151 0.84 +0.1
437,847 + 11519 mRNA_3151 0.84 +1.1
437,848 + 11519 mRNA_3151 0.84 -0.9
437,850 - 11519 mRNA_3151 0.84 +0.3
437,850 + 11519 mRNA_3151 0.84 +0.9
437,851 + 11519 mRNA_3151 0.84 -0.8
437,851 + 11519 mRNA_3151 0.84 +1.6
437,852 + 11519 mRNA_3151 0.84 +0.3
437,853 + 11519 mRNA_3151 0.84 +0.8
437,853 + 11519 mRNA_3151 0.84 +0.6
437,853 - 11519 mRNA_3151 0.84 -0.4
437,854 - 11519 mRNA_3151 0.84 -1.6
437,855 + 11519 mRNA_3151 0.84 -0.5
437,855 + 11519 mRNA_3151 0.84 +0.2
437,856 + 11519 mRNA_3151 0.84 +0.3
437,857 + 11519 mRNA_3151 0.84 +0.2
437,862 - 11519 mRNA_3151 0.85 +0.5
437,866 + 11519 mRNA_3151 0.85 +2.5
437,867 + 11519 mRNA_3151 0.85 +2.6
437,867 + 11519 mRNA_3151 0.85 +1.0
437,868 - 11519 mRNA_3151 0.85 -0.8
437,870 + 11519 mRNA_3151 0.85 +1.3
437,870 - 11519 mRNA_3151 0.85 +2.4
437,870 + 11519 mRNA_3151 0.85 +1.3
437,872 + 11519 mRNA_3151 0.85 +0.2
437,873 - 11519 mRNA_3151 0.85 -0.1
437,873 + 11519 mRNA_3151 0.85 +0.0
437,874 + 11519 mRNA_3151 0.86 -1.0
437,874 + 11519 mRNA_3151 0.86 +0.4
437,884 + 11519 mRNA_3151 0.86 -0.0
437,897 + 11519 mRNA_3151 0.87 -0.5
437,905 - 11519 mRNA_3151 0.87 -0.3
437,914 - 11519 mRNA_3151 0.88 +0.3
437,920 + 11519 mRNA_3151 0.88 +1.6
437,924 - 11519 mRNA_3151 0.89 +1.4
437,927 - 11519 mRNA_3151 0.89 -1.4
437,927 + 11519 mRNA_3151 0.89 +0.9
437,936 + 11519 mRNA_3151 0.89 -0.6
437,936 - 11519 mRNA_3151 0.89 -0.7
437,940 + 11519 mRNA_3151 0.90 +0.6
437,951 - -1.8
437,958 + -0.2
437,996 + +1.4
438,035 - +0.2
438,041 - +0.0
438,047 - +0.9
438,050 + +0.1
438,051 - -0.0
438,053 + -0.1
438,058 - +1.2
438,058 - -0.4
438,059 - +0.3
438,061 - -0.9
438,061 + +1.0
438,061 + +0.3
438,062 + +0.3
438,064 + -0.4
438,066 - -0.3
438,067 - -0.7
438,067 - +1.7
438,069 - +1.1
438,070 - +2.1
438,070 + +1.7
438,070 - +0.4
438,072 - -0.2
438,076 + -0.5
438,077 + -1.0
438,077 + +0.0
438,080 - -0.9
438,080 + +1.2
438,082 - +0.3
438,083 + +0.9
438,085 + -0.1
438,089 - +0.0
438,089 + +0.7
438,090 - -1.5
438,091 - +0.0
438,094 + +0.3
438,098 + +0.2
438,106 + -0.2
438,107 + +0.4
438,112 + +0.2
438,112 + +0.0
438,124 + +1.5
438,131 - +1.6
438,142 - -1.1
438,148 - -0.5
438,150 - -1.4
438,161 + +0.2
438,168 - +0.8
438,180 - -0.2
438,180 + -0.5
438,181 + +1.3
438,193 + -0.3
438,195 - +0.0
438,208 - +0.0
438,208 + -0.6
438,227 + +1.0
438,231 - -1.0
438,233 - +0.7
438,234 - +0.0
438,236 + +0.6
438,237 - -0.4
438,239 + -1.4
438,242 + +0.4
438,242 + +1.3
438,252 - +0.6
438,253 - +0.2
438,257 - -1.9
438,257 - +0.1
438,259 + +1.2
438,259 + +1.5
438,263 - +1.3
438,264 + -0.1
438,266 - -1.2
438,282 + +1.6
438,283 - +0.5
438,287 - +0.7
438,294 - +0.9
438,303 - -1.2
438,306 + +0.8
438,316 - -2.5
438,319 + -1.1
438,320 - +2.1
438,326 + +1.4
438,330 - -1.0
438,341 + -0.4
438,344 - +1.0
438,346 - +0.4
438,347 - -0.3
438,361 - +1.2
438,368 + -0.2
438,380 - -0.4
438,414 - -1.4
438,426 - -0.4
438,436 - -0.0
438,446 + +0.0
438,469 - +0.9
438,471 - -1.0
438,472 + -1.2
438,478 - -1.0
438,503 + -0.0
438,542 - -0.2
438,552 + -0.1
438,560 - -0.4
438,603 - +1.4
438,612 - +0.3
438,614 - +0.8
438,629 + -0.9
438,643 + -0.8
438,645 + +0.9
438,655 - +0.2
438,662 - +1.0
438,778 - +0.0
438,784 + +0.0
438,844 - 11520 mRNA_3152 0.17 -0.7
438,898 + 11520 mRNA_3152 0.32 -0.3
438,920 + 11520 mRNA_3152 0.38 +0.4
438,952 - 11520 mRNA_3152 0.46 +0.6
439,046 - 11520 mRNA_3152 0.72 -0.4
439,067 - 11520 mRNA_3152 0.77 +1.8
439,080 + 11520 mRNA_3152 0.81 -1.3
439,089 + 11520 mRNA_3152 0.83 -0.4

Or see this region's nucleotide sequence