Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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12 + -0.3
12 + +1.9
15 + +0.2
16 + +1.6
18 + -0.2
22 + +1.4
25 + -1.1
57 - -0.5
61 - +0.5
62 + -1.3
62 + +0.1
66 + +1.6
72 + +0.9
72 + +0.0
72 + -0.4
75 + -0.9
78 - -0.6
105 + +1.1
110 - -1.5
114 + +0.4
115 + +0.7
118 + +0.9
122 + +0.5
122 - +0.3
124 + +1.0
135 + -1.7
147 + +2.4
157 + +0.5
161 + -0.0
168 + -0.7
174 + -0.4
177 - +0.3
228 + -1.2
247 + -0.2
252 - +1.6
253 - -1.1
255 + +1.7
258 + +0.1
264 - +1.4
269 + +0.7
269 - +0.1
274 + -0.7
275 - +0.7
277 + -1.5
280 + +2.6
280 + -0.3
283 - +1.3
285 - -0.7
287 + +0.3
287 + +0.7
288 + +1.3
292 - -0.0
293 + -0.1
298 + +1.0
305 - -0.3
314 + +1.4
320 + +1.5
368 + +1.3
370 - -0.5
372 + +0.1
382 + +0.2
384 + -0.1
391 + +0.6
391 - -0.7
397 + +1.8
397 - +1.1
402 + -0.5
405 + -0.3
423 - +1.3
430 + +2.3
440 + +2.3
446 + +2.9
470 + -0.6
524 + +2.6
532 + +0.0
545 - +0.9
557 + -0.7
569 + +0.1
570 - -0.8
583 + +0.4
584 + +0.1
603 - +0.2
603 + +0.4
634 - 11537 mRNA_3169 0.11 +0.4
636 + 11537 mRNA_3169 0.11 -0.1
646 + 11537 mRNA_3169 0.12 +0.5
661 + 11537 mRNA_3169 0.13 +0.5
667 + 11537 mRNA_3169 0.14 +0.3
698 + 11537 mRNA_3169 0.17 +0.4
704 - 11537 mRNA_3169 0.18 +0.5
705 - 11537 mRNA_3169 0.18 +1.4
721 - 11537 mRNA_3169 0.19 -0.2
725 + 11537 mRNA_3169 0.20 +0.3
738 - 11537 mRNA_3169 0.21 +0.4
849 + 11537 mRNA_3169 0.32 +0.5
871 + 11537 mRNA_3169 0.34 -0.9
883 + 11537 mRNA_3169 0.35 +0.3
894 + 11537 mRNA_3169 0.37 +0.8
895 + 11537 mRNA_3169 0.37 -0.0
922 + 11537 mRNA_3169 0.39 -0.1
965 - 11537 mRNA_3169 0.44 -0.6
1,012 - 11537 mRNA_3169 0.48 +0.4
1,026 + 11537 mRNA_3169 0.50 +2.3
1,026 + 11537 mRNA_3169 0.50 +1.4
1,105 + 11537 mRNA_3169 0.58 -1.1
1,123 + 11537 mRNA_3169 0.60 +0.7
1,141 + 11537 mRNA_3169 0.61 +0.8
1,142 + 11537 mRNA_3169 0.61 +0.9
1,165 + 11537 mRNA_3169 0.64 -0.1
1,174 - 11537 mRNA_3169 0.65 -1.4
1,174 + 11537 mRNA_3169 0.65 +0.5
1,259 + 11537 mRNA_3169 0.73 +1.0
1,265 + 11537 mRNA_3169 0.74 +0.3
1,268 + 11537 mRNA_3169 0.74 +0.9
1,269 - 11537 mRNA_3169 0.74 +0.7
1,288 - 11537 mRNA_3169 0.76 +1.0
1,297 + 11537 mRNA_3169 0.77 +0.2
1,303 - 11537 mRNA_3169 0.78 -0.3
1,399 + 11537 mRNA_3169 0.87 +1.0
1,412 - 11537 mRNA_3169 0.88 -0.0
1,419 - 11537 mRNA_3169 0.89 -0.1
1,423 - 11537 mRNA_3169 0.90 +0.5
1,429 - +0.4
1,453 + -0.2
1,459 + +0.3
1,459 + -0.8
1,460 - +0.2
1,461 + +0.9
1,462 + +0.1
1,467 + +0.5
1,470 - -1.9
1,474 - +0.2
1,485 + -1.1
1,520 + -1.4
1,523 + +1.5
1,531 - -1.4
1,537 + -0.0
1,541 + -0.1
1,562 + -0.0
1,567 + -0.0
1,572 + +0.4
1,582 - -0.8
1,584 - -0.5
1,589 + -0.3
1,596 - +0.9
1,601 - +1.2
1,602 + -1.1
1,605 + -3.8
1,609 + -0.7
1,616 + -1.3
1,636 + +1.2
1,654 + +0.4
1,656 - -1.3
1,666 + +0.5
1,675 - +0.0
1,682 - -1.1
1,697 - -0.3
1,709 + +1.5
1,709 - +1.1
1,711 + +1.4
1,718 - -0.9
1,719 + -1.0
1,722 - +0.2
1,723 + +0.6
1,725 - -0.6
1,725 - -0.9
1,727 + +0.4
1,730 + -0.4
1,731 + +1.0
1,732 + -0.1
1,732 + +1.0
1,734 + +0.7
1,734 + +0.5
1,734 + +0.6
1,739 - +0.1
1,740 + -1.6
1,744 - +0.3
1,747 + -0.3
1,749 + +0.3
1,759 + -0.7
1,759 + -0.3
1,759 + -0.3
1,761 + +0.1
1,763 + +1.1
1,765 + +0.9
1,767 + +2.8
1,769 + +0.6
1,772 + +2.4
1,772 + +0.1
1,774 + +0.2
1,774 + +0.6
1,775 + +1.1
1,776 - +1.1
1,776 + -1.6
1,777 + -0.3
1,778 + +1.0
1,778 - +0.0
1,781 - +0.8
1,783 - +1.5
1,783 - +0.6
1,783 - +0.6
1,783 - -1.0
1,784 + -0.1
1,789 + +0.4
1,789 - -0.0
1,791 + +0.4
1,792 + +0.6
1,793 + +1.5
1,795 + -0.7
1,796 + -0.9
1,796 - -0.4
1,798 + +1.1
1,800 + -0.0
1,801 + +1.4
1,805 + -0.1
1,805 + -1.0
1,807 + +0.1
1,813 - +0.7
1,814 + -0.5
1,814 + +1.0
1,818 - -0.6
1,851 - -0.6
1,874 + -0.1
1,881 - +0.1
1,885 - +0.1
1,891 - -2.8
1,896 - +1.1
1,912 + +0.4
1,912 + -0.5
1,914 - -0.5
1,916 - -0.6
1,917 - +0.5
1,919 + -1.1
1,922 - +0.9
1,923 - -0.2
1,934 - +0.6
1,935 + +1.0
1,938 - +0.6
1,938 - -0.2
1,940 - -1.2
1,941 + +0.6
1,941 + +0.9
1,942 + -1.8
1,943 - -0.0
1,944 + +1.1
1,944 - +0.6
1,945 - -0.1
1,945 + +0.4
1,946 - -0.3
1,947 + +1.0
1,960 - -0.8
1,968 + +0.7
1,980 + -0.5
2,015 + +2.0
2,067 - -0.3
2,081 - +2.5
2,091 + -1.6
2,220 + +1.0
2,229 - +1.0
2,235 - -1.4
2,237 - +0.2
2,242 + +1.9
2,242 - +0.0
2,245 - +0.7
2,248 - -0.5
2,251 + +1.7
2,254 - +0.0
2,261 + +0.3
2,262 - +1.9
2,266 + +0.8
2,268 + +0.6
2,400 + 11538 mRNA_3170 0.21 -0.0
2,401 - 11538 mRNA_3170 0.21 -0.1
2,404 + 11538 mRNA_3170 0.22 +0.6
2,414 + 11538 mRNA_3170 0.23 -1.5
2,420 - 11538 mRNA_3170 0.23 +0.3
2,439 + 11538 mRNA_3170 0.25 -0.4
2,446 + 11538 mRNA_3170 0.26 -1.2
2,470 - 11538 mRNA_3170 0.28 +1.0
2,516 - 11538 mRNA_3170 0.32 -0.3

Or see this region's nucleotide sequence