Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3192

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11559 and 11560 are separated by 400 nucleotides11560 and 11561 are separated by 270 nucleotides mRNA_3191: 11559 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 50,210 to 52,668 11559 mRNA_3192: 11560 - HMMPfam-Hypothetical protein FLILHELTA-PF10306, at 53,069 to 53,726 11560 mRNA_3193: 11561 - K13116 DDX41, ABS ATP-dependent RNA helicase DDX41, at 53,997 to 56,662 11561

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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52,183 - 11559 mRNA_3191 0.80 -0.7
52,183 + 11559 mRNA_3191 0.80 -0.5
52,315 - 11559 mRNA_3191 0.86 +0.9
52,566 + -0.3
52,631 + +0.5
52,894 + +0.7
52,922 - +0.3
53,157 + 11560 mRNA_3192 0.13 -0.1
53,366 + 11560 mRNA_3192 0.45 +0.1
53,508 + 11560 mRNA_3192 0.67 +0.0
53,523 + 11560 mRNA_3192 0.69 -0.4
53,635 - 11560 mRNA_3192 0.86 +1.1
53,781 - -0.0
53,794 + -0.1
53,901 - -0.3
53,932 + +1.8
53,938 - +0.4
53,944 - -0.3
53,946 - +0.2
53,947 + -1.5
53,949 + +0.5
53,952 + +1.1

Or see this region's nucleotide sequence