Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3206

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11573 and 11574 are separated by 220 nucleotides11574 and 11575 are separated by 287 nucleotides mRNA_3205: 11573 - K13281 uvsE, UVE1 UV DNA damage endonuclease, at 83,287 to 85,713 11573 mRNA_3206: 11574 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 85,934 to 91,274 11574 mRNA_3207: 11575 - Hypothetical Protein, at 91,562 to 92,218 11575

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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84,998 + 11573 mRNA_3205 0.70 -2.1
85,132 + 11573 mRNA_3205 0.76 +0.1
85,239 - 11573 mRNA_3205 0.80 +0.4
85,551 - -0.6
85,556 + +2.3
85,563 - +0.3
85,597 + +2.7
85,610 - -0.2
85,638 - -0.3
85,704 + +0.1
85,706 - +0.3
85,742 + +0.3
85,757 + -1.4
85,766 - +1.1
85,777 + -0.3
85,782 - -1.3
85,789 + -0.1
85,823 + -1.4
85,841 + +0.9
85,927 - +0.1
86,090 - +0.7
86,105 - -0.9
86,154 - +0.6
86,235 + -0.2
86,535 + 11574 mRNA_3206 0.11 +0.1
86,685 + 11574 mRNA_3206 0.14 -0.2
86,690 - 11574 mRNA_3206 0.14 +0.2
86,927 - 11574 mRNA_3206 0.19 +1.2
87,158 + 11574 mRNA_3206 0.23 -0.8
87,245 + 11574 mRNA_3206 0.25 +1.3
87,397 - 11574 mRNA_3206 0.27 +0.5
87,399 + 11574 mRNA_3206 0.27 -0.7
87,412 - 11574 mRNA_3206 0.28 -0.5
87,506 - 11574 mRNA_3206 0.29 +1.8
87,524 - 11574 mRNA_3206 0.30 +2.1
87,565 - 11574 mRNA_3206 0.31 +0.4
87,582 + 11574 mRNA_3206 0.31 +0.9
87,661 - 11574 mRNA_3206 0.32 +0.5
87,690 + 11574 mRNA_3206 0.33 +0.4
87,978 + 11574 mRNA_3206 0.38 -0.4
88,085 - 11574 mRNA_3206 0.40 -0.4
88,370 - 11574 mRNA_3206 0.46 -1.5
88,612 + 11574 mRNA_3206 0.50 -1.4
88,694 - 11574 mRNA_3206 0.52 -1.1
88,872 - 11574 mRNA_3206 0.55 +0.6
89,269 + 11574 mRNA_3206 0.62 -1.6
89,431 + 11574 mRNA_3206 0.65 -0.3
89,635 + 11574 mRNA_3206 0.69 -0.1
89,729 - 11574 mRNA_3206 0.71 +0.1
89,960 - 11574 mRNA_3206 0.75 +0.5
90,000 + 11574 mRNA_3206 0.76 -0.4
90,017 + 11574 mRNA_3206 0.76 -2.0
90,152 + 11574 mRNA_3206 0.79 +2.6
90,309 - 11574 mRNA_3206 0.82 +0.2
90,437 - 11574 mRNA_3206 0.84 +0.4
90,557 + 11574 mRNA_3206 0.87 +0.1
90,992 - +0.2
90,993 - +0.9
91,001 + +0.8
91,002 - +0.0
91,025 + -0.6
91,043 - +2.4
91,158 + +0.5
91,165 + +0.2
91,175 + +0.9
91,184 + -0.6
91,201 - -1.0
91,266 - +1.3
91,319 + +1.1
91,326 - +0.3
91,444 - +1.6
91,464 - +0.1
91,516 + +1.2
91,572 + +0.6
91,585 - -0.3
91,599 - +1.5
91,631 - 11575 mRNA_3207 0.11 +0.1
91,636 + 11575 mRNA_3207 0.11 +0.2
91,647 + 11575 mRNA_3207 0.13 -0.8
91,658 + 11575 mRNA_3207 0.15 +1.2
91,660 + 11575 mRNA_3207 0.15 +0.5
91,670 + 11575 mRNA_3207 0.16 +0.3
91,772 - 11575 mRNA_3207 0.32 +0.1
91,782 - 11575 mRNA_3207 0.33 +0.6
91,793 - 11575 mRNA_3207 0.35 +1.0
91,943 + 11575 mRNA_3207 0.58 -0.7
92,069 - 11575 mRNA_3207 0.77 -0.3
92,227 - +2.8
92,235 + -0.4

Or see this region's nucleotide sequence