Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3300

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11667 and 11668 are separated by 160 nucleotides11668 and 11669 are separated by 253 nucleotides mRNA_3299: 11667 - K19704 PTC1 protein phosphatase PTC1, at 333,758 to 335,633 11667 mRNA_3300: 11668 - HMMPfam-Amidohydrolase-PF13147,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 335,794 to 339,454 11668 mRNA_3301: 11669 - K08197 ARN MFS transporter, SIT family, siderophore-iron-H+ symporter, at 339,708 to 341,858 11669

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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334,844 - 11667 mRNA_3299 0.58 -0.3
334,844 + 11667 mRNA_3299 0.58 +1.2
334,894 + 11667 mRNA_3299 0.61 +1.0
335,164 - 11667 mRNA_3299 0.75 +1.3
335,184 - 11667 mRNA_3299 0.76 +0.6
335,440 + 11667 mRNA_3299 0.90 +0.5
335,458 - +0.5
335,463 - -1.3
335,607 + -1.3
335,660 - +0.2
335,759 + +0.6
335,775 + -0.2
335,923 - -0.2
335,929 - +0.7
336,044 + +2.2
336,359 + 11668 mRNA_3300 0.15 +1.8
336,359 - 11668 mRNA_3300 0.15 -0.1
336,838 - 11668 mRNA_3300 0.29 +0.3
337,282 - 11668 mRNA_3300 0.41 +1.0
337,435 - 11668 mRNA_3300 0.45 +2.2
337,445 + 11668 mRNA_3300 0.45 -0.1
337,727 - 11668 mRNA_3300 0.53 -1.1
338,058 + 11668 mRNA_3300 0.62 +1.0
338,176 + 11668 mRNA_3300 0.65 +2.5
338,200 - 11668 mRNA_3300 0.66 +0.5
338,426 - 11668 mRNA_3300 0.72 +1.0
338,744 + 11668 mRNA_3300 0.81 +0.1
338,907 + 11668 mRNA_3300 0.85 +0.4
339,030 - 11668 mRNA_3300 0.88 -1.4
339,037 + 11668 mRNA_3300 0.89 +0.5
339,178 - -0.5
339,189 - +0.0
339,204 + +0.7
339,208 - -1.3
339,215 + +1.1
339,331 + +1.0
339,338 + +2.2
339,350 + -0.6
339,362 + +0.6
339,416 + +0.8
339,484 - +0.4
339,513 + +3.3
339,521 - +2.8
339,533 + +1.2
339,539 - -0.3
339,550 + -1.3
339,554 + +0.0
339,557 + +0.6
339,648 + -0.4
339,649 + +2.1
339,659 - -2.7
339,670 - +0.3
339,676 + +3.3
339,872 + +0.2
339,891 - +0.6
339,909 + +0.4
339,927 + 11669 mRNA_3301 0.10 +0.3
339,956 - 11669 mRNA_3301 0.12 +0.8
339,971 - 11669 mRNA_3301 0.12 +1.0
340,046 - 11669 mRNA_3301 0.16 +0.3
340,096 + 11669 mRNA_3301 0.18 +0.4
340,215 - 11669 mRNA_3301 0.24 +1.1
340,350 + 11669 mRNA_3301 0.30 +1.8

Or see this region's nucleotide sequence