Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3312

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11679 and 11680 are separated by 375 nucleotides mRNA_3311: 11679 - K00134 GAPDH, gapA glyceraldehyde 3-phosphate dehydrogenase, at 365,993 to 367,448 11679 mRNA_3312: 11680 - Hypothetical Protein, at 367,824 to 368,675 11680

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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366,867 - 11679 mRNA_3311 0.60 -2.4
366,940 + 11679 mRNA_3311 0.65 +0.9
367,077 + 11679 mRNA_3311 0.74 +0.6
367,302 + 11679 mRNA_3311 0.90 +0.5
367,340 + +0.6
367,394 - +0.4
367,508 - -0.2
367,517 - +0.7
367,523 - +0.3
367,529 - +1.4
367,534 - +1.1
367,550 - -0.8
367,550 + -0.5
367,835 - +0.7
368,002 - 11680 mRNA_3312 0.21 +1.8
368,003 + 11680 mRNA_3312 0.21 -1.4
368,431 + 11680 mRNA_3312 0.71 -0.2
368,609 + +0.8
368,617 + +0.1
368,858 - +1.0
368,859 - +0.4
368,888 - -0.2
369,016 + +0.1
369,139 + -0.3
369,155 - +0.1
369,287 - +1.6
369,290 - +0.2
369,306 + +0.7
369,307 + +1.1
369,467 + +1.4
369,493 - +0.1
369,626 - +0.6

Or see this region's nucleotide sequence