Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3327

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11694 and 11695 are separated by 323 nucleotides11695 and 11696 are separated by 133 nucleotides mRNA_3326: 11694 - BLAST allergen [Malassezia sympodialis ATCC 42132], at 400,658 to 402,328 11694 mRNA_3327: 11695 - HMMPfam-BAG domain-PF02179,SUPERFAMILY--SSF63491, at 402,652 to 404,277 11695 mRNA_3328: 11696 - BLAST YALIA101S10e03422g1_1 [Yarrowia lipolytica], at 404,411 to 405,058 11696

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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401,665 + 11694 mRNA_3326 0.60 -0.2
401,904 - 11694 mRNA_3326 0.75 +0.6
402,369 - +1.5
402,470 + -0.1
402,509 + +0.7
402,569 + +0.3
402,588 + -0.9
402,708 - +1.8
403,050 - 11695 mRNA_3327 0.24 +0.0
403,078 - 11695 mRNA_3327 0.26 +2.1
403,085 + 11695 mRNA_3327 0.27 -0.7
403,190 + 11695 mRNA_3327 0.33 +0.0
403,334 + 11695 mRNA_3327 0.42 +0.3
403,611 + 11695 mRNA_3327 0.59 -0.3
404,042 - 11695 mRNA_3327 0.85 -0.4
404,165 + +0.5
404,188 - +0.8
404,220 + -0.6
404,353 - +0.7
404,494 + 11696 mRNA_3328 0.13 -1.8
404,498 + 11696 mRNA_3328 0.13 -0.7

Or see this region's nucleotide sequence