Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3411

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11779 and 11780 are separated by 547 nucleotides mRNA_3411: 11779 - SUPERFAMILY--SSF81296, at 29,914 to 31,700 11779 mRNA_3412: 11780 - KOG0548 Molecular co-chaperone STI1, at 32,248 to 34,426 11780

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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29,278 + -0.8
29,413 + -0.2
29,566 - -2.5
29,594 - +0.4
29,601 + +0.3
29,707 + +1.6
29,804 - +0.7
29,821 + +1.3
29,834 + -1.7
29,838 + +0.9
29,849 - +0.5
29,868 + +1.1
29,895 + +0.5
30,000 - -0.9
30,002 - +0.2
30,013 + +1.1
30,015 - +0.5
30,037 + -0.7
30,343 - 11779 mRNA_3411 0.24 -1.7
30,347 - 11779 mRNA_3411 0.24 +0.3
30,597 - 11779 mRNA_3411 0.38 -0.6
30,890 - 11779 mRNA_3411 0.55 +0.5
31,195 + 11779 mRNA_3411 0.72 +1.5

Or see this region's nucleotide sequence