Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3495

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11862 and 11863 are separated by 264 nucleotides11863 and 11864 are separated by 187 nucleotides mRNA_3494: 11862 - SUPERFAMILY--SSF160104, at 237,336 to 238,428 11862 mRNA_3495: 11863 - KOG4118 Uncharacterized conserved protein, at 238,693 to 239,237 11863 mRNA_3496: 11864 - KOG1198 Zinc-binding oxidoreductase, at 239,425 to 240,814 11864

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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237,794 + 11862 mRNA_3494 0.42 -0.6
237,812 + 11862 mRNA_3494 0.44 +0.5
237,836 + 11862 mRNA_3494 0.46 +1.4
238,208 - 11862 mRNA_3494 0.80 +0.0
238,216 - 11862 mRNA_3494 0.81 +2.0
238,376 + +0.2
238,382 + -0.1
238,654 + +0.5
238,677 - -0.7
238,687 - -0.5
239,529 - -0.3
239,546 + +0.4
239,690 - 11864 mRNA_3496 0.19 +0.5
239,832 + 11864 mRNA_3496 0.29 -0.1
239,832 + 11864 mRNA_3496 0.29 -0.5
239,882 - 11864 mRNA_3496 0.33 +1.6
240,235 + 11864 mRNA_3496 0.58 +1.1

Or see this region's nucleotide sequence