Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3562

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_3562: 11930 - KOG0017 FOG Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations, at 59,099 to 59,542 11930

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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58,154 + +0.9
58,311 - +1.5
58,643 + +0.2
58,780 - +0.2
58,870 + +1.0
58,911 - +0.0
58,917 + +0.1
59,096 + -0.6
59,424 - 11930 mRNA_3562 0.73 +0.2
59,522 - -2.5
59,824 - +0.2
59,825 + -0.6
59,956 + +0.5
59,957 - -0.4
60,097 + -0.7
60,098 - -0.1
60,117 + +1.5
60,254 + +0.4
60,260 - -0.4
60,270 + +0.3
60,306 + -0.6
60,394 + -2.6
60,399 + +1.0
60,406 - +1.2
60,413 + -0.6
60,424 + +0.7
60,437 - -0.1

Or see this region's nucleotide sequence