Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3578

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11945 and 11946 are separated by 370 nucleotides11946 and 11947 are separated by 150 nucleotides mRNA_3577: 11945 - K04567 KARS, lysS lysyl-tRNA synthetase, class II, at 88,992 to 92,589 11945 mRNA_3578: 11946 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 92,960 to 93,719 11946 mRNA_3579: 11947 - K16570 TUBGCP3, GCP3 gamma-tubulin complex component 3, at 93,870 to 96,029 11947

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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92,548 - -1.1
92,550 - +1.3
92,554 + -0.5
92,568 + +1.1
92,570 - +0.9
92,702 - -0.2
92,706 + +0.2
92,711 - +0.1
92,712 - -0.3
92,717 - -0.6
92,723 - -0.4
92,724 - -1.7
92,728 - -0.1
92,744 + +0.4
92,766 - -0.2
92,778 - +2.1
92,815 + -0.1
92,834 - +0.5
92,841 - +0.1
92,846 - -0.1
92,846 + -0.1
92,847 + -1.0
92,861 - +0.9
92,863 - +1.9
92,869 - +1.0
92,875 + +0.6
92,876 + +0.8
92,876 + -0.2
92,879 + -1.5
92,879 + -1.5
92,886 - -1.5
93,831 + -1.4
93,919 - +1.4

Or see this region's nucleotide sequence