Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3631

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11998 and 11999 are separated by 365 nucleotides11999 and 12000 are separated by 382 nucleotides mRNA_3630: 11998 - Hypothetical Protein, at 205,632 to 206,590 11998 mRNA_3631: 11999 - Hypothetical Protein, at 206,956 to 207,306 11999 mRNA_3632: 12000 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 207,689 to 209,563 12000

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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206,155 - 11998 mRNA_3630 0.55 +0.9
206,412 - 11998 mRNA_3630 0.81 -0.1
206,473 + 11998 mRNA_3630 0.88 +0.8
206,587 + -0.2
206,597 - +0.1
206,856 - -0.3
207,039 - 11999 mRNA_3631 0.24 -0.6
207,315 + -0.1
207,605 + -0.8
207,606 - -3.6
208,208 - 12000 mRNA_3632 0.28 -1.8
208,229 - 12000 mRNA_3632 0.29 -0.4

Or see this region's nucleotide sequence