Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3703

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12070 and 12071 are separated by 230 nucleotides12071 and 12072 are separated by 257 nucleotides12072 and 12073 are separated by 155 nucleotides mRNA_3702: 12070 - HMMPfam-Inner centromere protein, ARK binding region-PF03941, at 390,554 to 394,764 12070 mRNA_3703: 12071 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 394,995 to 398,800 12071 mRNA_3704: 12072 - Hypothetical Protein, at 399,058 to 399,573 12072 mRNA_3705: 12073 - Hypothetical Protein, at 399,729 to 400,196 12073

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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394,726 - +0.5
394,735 + -0.8
394,735 - -1.1
394,750 - +0.8
394,874 + -0.2
394,877 - -0.1
394,879 + -0.5
394,881 + +1.4
394,886 + +0.7
394,903 - -0.0
394,906 - -0.4
394,915 - +2.8
394,919 - +0.5
394,926 + -1.1
394,942 - -1.1
394,963 - -0.8
395,040 + -0.4
395,048 + +0.9
395,061 + +0.2
395,084 + -0.4
395,087 - -0.8
395,196 - +0.6
395,201 + +0.1
395,208 - +0.7
395,353 - +0.2
395,542 + 12071 mRNA_3703 0.14 +0.1
395,660 - 12071 mRNA_3703 0.17 +0.8
395,665 - 12071 mRNA_3703 0.18 -0.8
396,364 + 12071 mRNA_3703 0.36 +0.1
396,387 - 12071 mRNA_3703 0.37 +0.2
396,505 - 12071 mRNA_3703 0.40 +2.0
396,541 - 12071 mRNA_3703 0.41 +1.5
396,606 - 12071 mRNA_3703 0.42 -0.1
396,698 + 12071 mRNA_3703 0.45 +0.7
396,947 - 12071 mRNA_3703 0.51 +0.8
397,081 - 12071 mRNA_3703 0.55 +1.5
397,113 + 12071 mRNA_3703 0.56 -0.6
397,393 + 12071 mRNA_3703 0.63 -0.4
397,517 - 12071 mRNA_3703 0.66 -0.0
397,542 + 12071 mRNA_3703 0.67 -0.4
397,803 + 12071 mRNA_3703 0.74 -0.7
397,838 + 12071 mRNA_3703 0.75 +1.4
397,932 - 12071 mRNA_3703 0.77 -0.3
397,953 + 12071 mRNA_3703 0.78 +0.1
398,093 - 12071 mRNA_3703 0.81 +0.9
398,384 + 12071 mRNA_3703 0.89 -0.8
398,422 + +0.6
398,537 - +0.5
398,559 + -0.5
398,963 - +1.0
398,963 + -0.2
399,549 - +0.2
399,572 + -0.5
399,691 - +0.0
399,702 + +1.1
399,715 + -0.9

Or see this region's nucleotide sequence