Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3762

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12129 and 12130 are separated by 413 nucleotides12130 and 12131 are separated by 343 nucleotides mRNA_3761: 12129 - K20520 DBNL, ABP1 drebrin-like protein, at 522,660 to 525,046 12129 mRNA_3762: 12130 - Hypothetical Protein, at 525,460 to 525,822 12130 mRNA_3763: 12131 - Hypothetical Protein, at 526,166 to 531,244 12131

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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524,464 - 12129 mRNA_3761 0.76 +0.1
524,782 + 12129 mRNA_3761 0.89 +1.3
524,913 - -0.3
524,933 + -0.1
524,934 + +0.3
524,945 + -0.9
525,083 - +1.0
525,088 + +0.2
525,171 - +0.7
525,252 - -0.0
525,269 + -3.0
525,377 + -0.4
525,566 + 12130 mRNA_3762 0.29 +1.0
525,844 + -0.4
525,949 - -0.6
526,106 - -0.1
526,131 + -0.2
526,253 - -1.7
526,280 - -0.0
526,284 + +0.2
526,285 + -1.5
526,389 - +0.6
526,394 - -1.2

Or see this region's nucleotide sequence