Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3802

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12169 and 12170 are separated by 186 nucleotides12170 and 12171 are separated by 965 nucleotides mRNA_3801: 12169 - K12591 RRP6, EXOSC10 exosome complex exonuclease RRP6, at 607,714 to 610,860 12169 mRNA_3802: 12170 - K01939 purA, ADSS adenylosuccinate synthase, at 611,047 to 612,951 12170 mRNA_3803: 12171 - Hypothetical Protein, at 613,917 to 616,021 12171

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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610,310 + 12169 mRNA_3801 0.82 +0.5
610,430 + 12169 mRNA_3801 0.86 +0.5
610,610 - -0.7
610,610 - -0.0
610,619 + +0.3
612,960 - -0.0
612,981 - +0.0
612,990 + +1.6
612,990 + +1.3
612,995 + -0.1
612,997 - -1.5
613,294 + +0.0
613,295 - +0.5
613,300 + -0.1
613,581 + -0.1
613,597 - +0.9

Or see this region's nucleotide sequence