Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3844

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12211 and 12212 are separated by 115 nucleotides12212 and 12213 are separated by 472 nucleotides mRNA_3843: 12211 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 719,514 to 723,213 12211 mRNA_3844: 12212 - HMMPfam-Afadin- and alpha -actinin-Binding-PF11559, at 723,329 to 725,612 12212 mRNA_3845: 12213 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 726,085 to 727,619 12213

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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722,347 + 12211 mRNA_3843 0.77 +1.1
722,480 - 12211 mRNA_3843 0.80 +1.0
722,503 + 12211 mRNA_3843 0.81 -1.1
722,505 + 12211 mRNA_3843 0.81 +0.6
722,732 - 12211 mRNA_3843 0.87 -0.2
722,776 + 12211 mRNA_3843 0.88 -1.6
722,943 + -0.1
723,055 - -0.1
723,639 - 12212 mRNA_3844 0.14 +1.0
723,696 - 12212 mRNA_3844 0.16 -0.7
724,082 - 12212 mRNA_3844 0.33 +0.6
724,108 + 12212 mRNA_3844 0.34 -0.8
724,141 + 12212 mRNA_3844 0.36 +0.8
724,366 - 12212 mRNA_3844 0.45 -0.7
724,390 - 12212 mRNA_3844 0.46 +0.0
724,427 + 12212 mRNA_3844 0.48 +2.5
724,517 - 12212 mRNA_3844 0.52 +1.8
724,804 + 12212 mRNA_3844 0.65 -1.7
725,810 - +0.3
725,826 - +1.8
725,831 - -0.4
725,966 - +0.7
725,990 - +2.2
726,093 + +1.3
726,278 + 12213 mRNA_3845 0.13 +0.4
726,552 - 12213 mRNA_3845 0.30 +0.9
726,565 - 12213 mRNA_3845 0.31 +0.3
726,597 + 12213 mRNA_3845 0.33 +0.7

Or see this region's nucleotide sequence