Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3853

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12220 and 12221 are separated by 678 nucleotides12221 and 12222 are separated by 747 nucleotides mRNA_3852: 12220 - HMMPfam-Glutathione S-transferase, C-terminal domain-PF00043,HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,ProSiteProfiles-Soluble glutathione S-transferase N-terminal domain profile.-PS50404,ProSiteProfiles-Soluble glutathione S-transferase C-terminal domain profile.-PS50405,SUPERFAMILY--SSF47616,SUPERFAMILY--SSF52833, at 744,290 to 745,525 12220 mRNA_3853: 12221 - K08193 SLC17A MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), other, at 746,204 to 748,742 12221 mRNA_3854: 12222 - Hypothetical Protein, at 749,490 to 750,342 12222

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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745,279 - 12220 mRNA_3852 0.80 +0.1
745,296 + 12220 mRNA_3852 0.81 -0.0
745,420 - +0.1
745,423 - +0.3
745,538 + +0.2
745,664 + +0.8
745,896 + +0.3
746,470 + 12221 mRNA_3853 0.10 +0.7
746,697 - 12221 mRNA_3853 0.19 +0.7
746,768 + 12221 mRNA_3853 0.22 -0.2
746,847 + 12221 mRNA_3853 0.25 +2.7
746,899 + 12221 mRNA_3853 0.27 +0.5
747,036 + 12221 mRNA_3853 0.33 -0.1
747,285 + 12221 mRNA_3853 0.43 +1.1
747,750 - 12221 mRNA_3853 0.61 +0.7
748,050 - 12221 mRNA_3853 0.73 -0.2
748,215 + 12221 mRNA_3853 0.79 -1.7
748,220 + 12221 mRNA_3853 0.79 -0.6
748,648 - -1.2
748,650 + -0.6
748,657 + +0.1
748,782 - -0.2
748,800 + +0.9
748,810 - -0.4
748,814 - +0.9
748,831 + +0.1
748,912 + +0.3
748,914 + -0.5
748,915 - +0.7
748,931 + +0.3
748,935 + +0.6
748,936 - -0.9
748,937 + +0.1
748,939 - +1.5
748,948 + +1.7
748,953 - -0.2
748,976 - -0.3
748,982 + +1.2
748,991 + -1.0
748,998 - -0.1
749,044 + +1.1
749,048 - -0.1
749,057 - -0.4
749,058 - +1.6
749,063 - +0.1
749,068 + +1.6
749,071 + +0.2
749,072 + -0.1
749,089 - +0.9
749,096 + +0.2
749,098 - +0.3
749,225 + -1.0
749,227 - +0.7
749,243 - -1.2
749,251 - -0.2
749,258 - +2.2
749,259 + +0.1
749,263 + -0.3
749,266 + +1.2
749,268 - +0.2
749,283 + -0.2
749,364 - +0.5
749,373 - +0.8
749,374 + +1.3
749,379 + +0.5
749,388 - -0.1
749,392 + -0.2
749,393 - +0.8
749,395 + +0.5
749,402 + -1.9
749,402 + -0.5
749,409 + +0.8
749,416 - +0.5
749,422 + -0.1
749,423 + +0.6
749,425 - -0.1
749,425 + -0.3
749,538 + -1.0
749,583 - 12222 mRNA_3854 0.11 -0.3
749,588 - 12222 mRNA_3854 0.11 -1.4
749,661 - 12222 mRNA_3854 0.20 -0.4

Or see this region's nucleotide sequence