Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3877

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12244 and 12245 are separated by 417 nucleotides mRNA_3876: 12244 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 804,740 to 806,816 12244 mRNA_3877: 12245 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 807,234 to 808,789 12245

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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806,236 - 12244 mRNA_3876 0.72 +0.0
806,239 - 12244 mRNA_3876 0.72 +1.0
806,284 - 12244 mRNA_3876 0.74 -2.8
806,517 - 12244 mRNA_3876 0.86 -1.2
806,669 - +2.6
807,109 + +2.2
809,186 - +2.6
809,194 + +2.9
809,208 - +0.6
809,215 + -0.7
809,232 + +2.6
809,355 - -0.3
809,355 - +0.4
809,387 - -0.2
809,404 + -0.4
809,511 + +1.8
809,517 - -0.1
809,519 - +0.5
809,527 - +0.2
809,529 - +1.9
809,531 - +0.2
809,535 + +1.1
809,546 - +0.7
809,548 + +0.5
809,548 + +0.4
809,556 + +0.5
809,585 - -0.1
809,586 + +1.2
809,596 - +0.3
809,726 + -0.3
809,729 + +1.7

Or see this region's nucleotide sequence