Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3921

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12289 and 12290 are separated by 442 nucleotides mRNA_3921: 12289 - Hypothetical Protein, at 910,029 to 911,741 12289 mRNA_3922: 12290 - K11099 SNRPG, SMG small nuclear ribonucleoprotein G, at 912,184 to 912,720 12290

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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909,062 + +0.2
909,070 - -0.3
909,078 - -0.2
909,080 - +0.7
909,141 + -0.2
909,237 - +1.5
909,367 + -0.4
909,390 - +0.8
909,407 + +0.2
909,507 + +2.7
909,519 - +0.2
909,519 - +0.2
909,560 + +0.2
909,657 + -0.7
909,820 - -0.2
909,994 + +0.1
910,840 - 12289 mRNA_3921 0.47 -0.2
911,122 - 12289 mRNA_3921 0.64 +2.2
911,139 + 12289 mRNA_3921 0.65 -0.8
911,145 + 12289 mRNA_3921 0.65 -1.2
911,803 + +0.8
911,979 + +1.9
911,984 - -1.5
911,987 + +0.9
912,009 + -0.4
912,110 + +2.3
912,116 - +0.3
912,119 - +0.2
912,123 - +0.2
912,125 - +1.0
912,126 - +0.1
912,145 - +0.8
912,149 - -0.3

Or see this region's nucleotide sequence