Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3935

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12302 and 12303 are separated by 518 nucleotides12303 and 12304 are separated by 464 nucleotides mRNA_3934: 12302 - K01955 carB, CPA2 carbamoyl-phosphate synthase large subunit, at 940,362 to 944,260 12302 mRNA_3935: 12303 - HMMPfam-ER protein Pkr1-PF08636, at 944,779 to 945,196 12303 mRNA_3936: 12304 - Hypothetical Protein, at 945,661 to 946,219 12304

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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944,022 - -0.2
944,261 - -1.8
944,525 + +0.7
944,756 + +0.2
945,105 - 12303 mRNA_3935 0.78 +0.3
945,141 - 12303 mRNA_3935 0.87 -0.4
945,225 + -0.0
945,231 + +0.0
945,233 + -0.3
945,252 - +0.3
945,253 + -0.9
945,268 - -0.0
945,352 - +0.7
945,403 - -0.6
945,404 - -1.2
945,404 - +1.1
945,542 - -0.1
945,546 - -0.6
945,548 + +0.6
945,549 + -1.6
945,562 + +2.3
945,880 + 12304 mRNA_3936 0.39 +0.2
946,093 - 12304 mRNA_3936 0.77 -1.8

Or see this region's nucleotide sequence