Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4013

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12380 and 12381 are separated by 913 nucleotides12381 and 12382 are separated by 228 nucleotides mRNA_4012: 12380 - KOG2370 Cactin, at 1,149,929 to 1,152,487 12380 mRNA_4013: 12381 - HMMPfam-DJ-1/PfpI family-PF01965,HMMPfam-N-terminal domain of DJ-1_PfpI family-PF13587,SUPERFAMILY--SSF52317, at 1,153,401 to 1,154,671 12381 mRNA_4014: 12382 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 1,154,900 to 1,159,801 12382

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,152,536 - +0.6
1,152,538 + -0.2
1,152,544 + +1.7
1,152,549 + +0.9
1,152,692 + +0.3
1,152,700 + +2.5
1,152,846 + +1.0
1,152,995 + +0.6
1,153,410 + -1.0
1,153,836 - 12381 mRNA_4013 0.34 +0.1
1,153,989 - 12381 mRNA_4013 0.46 -0.4
1,154,559 - +1.6
1,154,590 + -0.2
1,154,594 - +1.4
1,154,680 - +1.0
1,154,732 + +1.5
1,154,738 - +0.7
1,154,742 - +0.5
1,154,742 - +1.3
1,154,745 + -0.1
1,154,745 - +0.9
1,154,748 - +0.8
1,154,758 - +2.4
1,154,761 - +0.5
1,154,764 + -1.2
1,154,764 + +1.4
1,154,770 + -0.0
1,154,778 - +2.8
1,154,788 - +0.0
1,154,788 - +0.5
1,154,789 - +0.2
1,154,790 - +3.0
1,154,793 + +1.1
1,154,798 + +1.0
1,154,813 + -0.1
1,154,911 - +0.2
1,154,913 + +1.5
1,154,920 + +1.6
1,154,936 - +0.3
1,154,952 + +0.5
1,154,956 + -0.4
1,154,956 + -0.5
1,154,958 - -0.6
1,154,962 + +0.4
1,155,100 - -0.2
1,155,109 + -0.3
1,155,119 + -0.9
1,155,129 - +0.1
1,155,557 - 12382 mRNA_4014 0.13 +0.1

Or see this region's nucleotide sequence