Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4026

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12393 and 12394 are separated by 138 nucleotides12394 and 12395 are separated by 551 nucleotides mRNA_4025: 12393 - K15634 gpmB probable phosphoglycerate mutase, at 1,185,909 to 1,186,748 12393 mRNA_4026: 12394 - HMMPfam-Cyclin-PF08613, at 1,186,887 to 1,188,212 12394 mRNA_4027: 12395 - K12863 CWC15 protein CWC15, at 1,188,764 to 1,189,753 12395

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,186,091 - 12393 mRNA_4025 0.22 +1.1
1,186,364 - 12393 mRNA_4025 0.54 -0.3
1,186,385 + 12393 mRNA_4025 0.57 +0.8
1,186,644 - 12393 mRNA_4025 0.88 -0.4
1,186,649 + 12393 mRNA_4025 0.88 -0.6
1,186,654 + 12393 mRNA_4025 0.89 -1.4
1,186,793 + +0.5
1,186,798 + -0.4
1,188,088 - -1.2
1,188,120 - -0.6
1,188,126 + +0.2
1,188,131 + +1.3
1,188,131 + -0.6
1,188,256 + -0.1
1,188,258 - -0.1
1,188,263 + +0.7
1,188,267 - -0.4
1,188,293 + +0.7
1,188,383 - +1.4
1,188,402 + -0.3
1,188,407 + +0.1
1,188,534 - +1.2
1,188,547 - -0.8
1,188,549 - +0.4
1,188,549 + +0.8
1,188,551 - -0.7
1,188,554 - +0.3
1,188,563 + +0.7

Or see this region's nucleotide sequence