Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4045

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12412 and 12413 are separated by 492 nucleotides12413 and 12414 are separated by 240 nucleotides mRNA_4044: 12412 - Hypothetical Protein, at 1,225,766 to 1,226,356 12412 mRNA_4045: 12413 - Hypothetical Protein, at 1,226,849 to 1,229,104 12413 mRNA_4046: 12414 - HMMPfam-Starch binding domain-PF00686,SUPERFAMILY--SSF49452, at 1,229,345 to 1,230,784 12414

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,225,914 - 12412 mRNA_4044 0.25 -0.1
1,226,217 - 12412 mRNA_4044 0.76 -0.5
1,226,253 + 12412 mRNA_4044 0.82 +2.0
1,226,325 + -1.0
1,226,352 + +2.1
1,226,493 + +0.3
1,226,947 + +1.2
1,227,424 - 12413 mRNA_4045 0.25 +1.6
1,227,792 + 12413 mRNA_4045 0.42 -0.6
1,228,089 - 12413 mRNA_4045 0.55 +0.6
1,228,282 - 12413 mRNA_4045 0.64 -0.1
1,229,004 + +1.3
1,229,282 + -0.0
1,229,406 - +1.4
1,229,453 + +1.0
1,229,511 - 12414 mRNA_4046 0.12 +0.8
1,229,710 - 12414 mRNA_4046 0.25 -2.5
1,229,727 + 12414 mRNA_4046 0.27 +0.4
1,229,730 - 12414 mRNA_4046 0.27 -0.3
1,229,743 + 12414 mRNA_4046 0.28 +1.8
1,229,749 + 12414 mRNA_4046 0.28 -0.1
1,229,853 - 12414 mRNA_4046 0.35 -0.0
1,229,870 + 12414 mRNA_4046 0.36 +0.7
1,229,871 + 12414 mRNA_4046 0.37 -0.7
1,229,873 + 12414 mRNA_4046 0.37 -2.3
1,229,882 + 12414 mRNA_4046 0.37 +0.1
1,229,883 + 12414 mRNA_4046 0.37 +0.8
1,229,885 - 12414 mRNA_4046 0.38 +0.3
1,229,888 - 12414 mRNA_4046 0.38 +0.4
1,229,905 - 12414 mRNA_4046 0.39 -0.2
1,229,910 + 12414 mRNA_4046 0.39 -0.1
1,229,914 + 12414 mRNA_4046 0.40 -0.0
1,229,917 + 12414 mRNA_4046 0.40 -0.7
1,229,924 + 12414 mRNA_4046 0.40 +0.6
1,229,925 + 12414 mRNA_4046 0.40 +1.2
1,229,933 - 12414 mRNA_4046 0.41 -0.4
1,229,939 - 12414 mRNA_4046 0.41 +1.0
1,230,060 - 12414 mRNA_4046 0.50 -1.1
1,230,062 - 12414 mRNA_4046 0.50 +1.0
1,230,063 + 12414 mRNA_4046 0.50 -0.2
1,230,083 + 12414 mRNA_4046 0.51 +0.1

Or see this region's nucleotide sequence