Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4051

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12419 and 12420 are separated by 400 nucleotides mRNA_4051: 12419 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 1,242,225 to 1,242,676 12419 mRNA_4052: 12420 - HMMPfam-Transcription factor Opi1-PF08618, at 1,243,077 to 1,245,269 12420

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,241,362 - +0.8
1,241,448 + -0.2
1,241,451 - +1.1
1,241,472 - -0.3
1,241,474 - -0.1
1,241,474 - +0.5
1,241,476 - -0.3
1,241,482 + +0.2
1,241,483 - +2.3
1,241,483 - +0.6
1,241,484 - -1.0
1,241,513 + -0.1
1,241,528 - +0.7
1,241,532 - -0.6
1,241,545 - +1.9
1,241,567 + -0.8
1,241,583 - +0.2
1,241,601 - -1.0
1,241,619 + -0.1
1,241,622 + +1.1
1,241,626 - -2.0
1,241,628 - +0.6
1,241,640 + -0.4
1,241,641 + -0.7
1,241,645 - -1.1
1,241,647 + -0.3
1,241,656 + -0.8
1,241,660 - -0.5
1,241,671 - +0.6
1,241,673 + +0.2
1,241,676 - -0.8
1,241,685 + -0.0
1,241,687 - -0.9
1,241,694 + -0.2
1,241,696 - -0.2
1,241,701 + -0.2
1,241,704 - -1.9
1,241,720 + -1.3
1,241,728 + +0.9
1,241,739 - +1.7
1,241,784 + -0.4
1,241,800 + +1.2
1,241,820 + +0.4
1,241,834 - +0.2
1,241,849 + +1.2
1,241,973 + +0.9
1,242,318 - 12419 mRNA_4051 0.21 +1.3
1,242,586 - 12419 mRNA_4051 0.80 +1.0
1,242,606 - 12419 mRNA_4051 0.84 -1.2
1,242,913 + +3.0
1,242,925 + +1.0
1,243,009 - +0.5
1,243,009 + -1.2
1,243,030 + +0.3
1,243,432 - 12420 mRNA_4052 0.16 +0.5
1,243,618 - 12420 mRNA_4052 0.25 +0.2

Or see this region's nucleotide sequence