Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4283

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12650 and 12651 are separated by 306 nucleotides12651 and 12652 are separated by 314 nucleotides mRNA_4282: 12650 - Hypothetical Protein, at 1,796,863 to 1,797,558 12650 mRNA_4283: 12651 - KOG2383 Predicted ATPase, at 1,797,865 to 1,800,888 12651 mRNA_4284: 12652 - KOG2806 Chitinase, at 1,801,203 to 1,803,513 12652

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,796,879 + +0.2
1,797,060 + 12650 mRNA_4282 0.28 -0.6
1,797,216 + 12650 mRNA_4282 0.51 -0.5
1,797,336 + 12650 mRNA_4282 0.68 +0.9
1,797,413 - 12650 mRNA_4282 0.79 +0.8
1,797,761 - +1.1
1,797,781 - +2.9
1,797,785 + -0.1
1,797,795 - -0.2
1,797,801 - -0.1
1,797,802 + -0.1
1,797,946 - +0.3
1,797,948 - +0.4
1,797,950 - +1.8
1,798,811 + 12651 mRNA_4283 0.31 +0.4
1,798,965 + 12651 mRNA_4283 0.36 -0.2
1,799,204 - 12651 mRNA_4283 0.44 +0.3
1,799,675 + 12651 mRNA_4283 0.60 -1.5
1,800,116 - 12651 mRNA_4283 0.74 -0.7
1,800,179 + 12651 mRNA_4283 0.77 +0.5
1,800,377 + 12651 mRNA_4283 0.83 +1.3
1,800,527 + 12651 mRNA_4283 0.88 +0.7
1,800,565 + 12651 mRNA_4283 0.89 +0.7
1,800,583 - 12651 mRNA_4283 0.90 +1.5
1,800,843 - +0.2
1,800,852 + +0.1
1,800,864 + -0.3
1,800,878 + -0.5
1,801,028 - -0.7
1,801,034 + +0.2
1,801,294 + +0.4
1,801,406 - +1.7
1,801,518 + 12652 mRNA_4284 0.14 +1.1

Or see this region's nucleotide sequence