Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4304

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12671 and 12672 are separated by 788 nucleotides mRNA_4303: 12671 - K14005 SEC31 protein transport protein SEC31, at 1,846,529 to 1,852,379 12671 mRNA_4304: 12672 - Hypothetical Protein, at 1,853,168 to 1,855,421 12672

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,852,434 - +0.2
1,852,441 - -0.1
1,852,443 + +0.1
1,852,445 - -0.9
1,852,447 - +0.0
1,852,447 - +0.8
1,852,452 - -0.1
1,852,460 + +0.2
1,852,461 - -1.2
1,852,465 + +1.3
1,852,472 + +0.6
1,852,473 + -0.8
1,852,607 + -0.1
1,852,611 - +1.0
1,852,614 + -0.2
1,852,624 - +0.3
1,852,640 + +0.9
1,852,652 - +0.3
1,852,667 + -0.1
1,852,730 - +0.2
1,852,745 + -0.0
1,852,748 + -2.8
1,852,751 + -1.4
1,852,758 - -1.5
1,852,777 - -1.0
1,852,786 - +1.9
1,852,791 + +0.5
1,852,803 + +0.9
1,852,804 - +2.4
1,852,805 + -0.4
1,852,869 + +1.4
1,852,896 - +0.3
1,852,924 + +0.8
1,852,926 - +1.3
1,852,930 - +0.8
1,852,931 - +0.4
1,852,936 - +1.1
1,852,937 - +0.5
1,852,945 - -0.4
1,852,955 + +0.9
1,852,970 + +0.5
1,852,971 + -0.4
1,852,977 + +0.3
1,852,979 + -0.1
1,852,994 - -0.4
1,853,012 + +2.1
1,853,033 - +0.4
1,853,036 + +0.1
1,853,054 - -0.7
1,853,073 + +1.0
1,853,080 + +0.9
1,853,082 + +0.2
1,853,083 + +0.4
1,853,085 - +1.0
1,853,085 + +0.5
1,853,089 - -0.2
1,853,091 + +0.4
1,853,093 - +1.2
1,853,361 - -0.7
1,853,369 - +1.0
1,853,377 - -0.0
1,853,388 + +0.5
1,853,540 - 12672 mRNA_4304 0.17 +0.3
1,853,964 + 12672 mRNA_4304 0.35 -0.0
1,854,650 - 12672 mRNA_4304 0.66 -0.5
1,854,659 + 12672 mRNA_4304 0.66 +0.7
1,854,815 - 12672 mRNA_4304 0.73 -0.0
1,854,999 + 12672 mRNA_4304 0.81 +0.6
1,855,065 + 12672 mRNA_4304 0.84 +1.7
1,855,876 + +1.0
1,855,965 - -0.6
1,856,387 + +0.3

Or see this region's nucleotide sequence